View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14742_high_10 (Length: 327)

Name: NF14742_high_10
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14742_high_10
NF14742_high_10
[»] chr8 (6 HSPs)
chr8 (14-311)||(3324670-3324967)
chr8 (113-306)||(3398289-3398482)
chr8 (117-306)||(31176086-31176275)
chr8 (178-233)||(3375369-3375424)
chr8 (14-94)||(3262300-3262380)
chr8 (177-265)||(7164485-7164573)
[»] chr5 (4 HSPs)
chr5 (112-306)||(20812516-20812710)
chr5 (113-306)||(20838871-20839064)
chr5 (178-305)||(12598886-12599013)
chr5 (13-48)||(12598803-12598838)
[»] chr3 (1 HSPs)
chr3 (174-237)||(32410919-32410982)
[»] chr6 (1 HSPs)
chr6 (171-269)||(31059636-31059733)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 3324670 - 3324967
Alignment:
Q  14 gaacctgtgatatgttcttgccaagagtgttgatggccatgctacaacttcctaatccaatcaaaagcgatctccaggaaatttctaagatccgtgaagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  3324670 gaacctgtgatatgttcttgccaagagtgttgatggccatgctgcaacttcctaatccaatcaaaagcgatctccaggaaatttctaagattcgtgatgc 3324769  T
Q  114 atgtgatattgtttccaacttggtaaaacttacatcatatagatcattnnnnnnnnntcttaattcttgagtcagttgaatctctgatcggcattgaatc 213  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  3324770 atgtgatattgtttcgaacttggtaaaacttacatcatatagatcatcaaaaaagtttcttaattcttgagtcagttgaatctctgatcggcattgaatc 3324869  T
Q  214 caaacacttctaagttttgaaaggttgggaagcattggtgattgatagcccatattgttagtagttacatccaaggaaactagtgacaatgaacttcg 311  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  3324870 caaacacttctatgttttgaaagattgggaagcattggtgattgatagcccatattgttagtagttaaatccaaggaaactggtgacaatgaatttcg 3324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 306
Target Start/End: Original strand, 3398289 - 3398482
Alignment:
Q  113 catgtgatattgtttccaacttggtaaaacttacatcatatagatcattnnnnnnnnntcttaattcttgagtcagttgaatctctgatcggcattgaat 212  Q
    |||||||| ||||||||||||  |||||| | ||||||||||||||||          ||||||||||||||| |||||| |||||||  |||||||||     
T  3398289 catgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgactggcattgaaa 3398388  T
Q  213 ccaaacacttctaagttttgaaaggttgggaagcattggtgattgatagcccatattgttagtagttacatccaaggaaactagtgacaatgaa 306  Q
    |||||||| || ||| |||||||||  || ||||||||||||||||||| ||||||| ||| |     ||| |||||||||||| |||||||||    
T  3398389 ccaaacacatcgaagctttgaaaggacggtaagcattggtgattgatagtccatattattactttccgcatgcaaggaaactagagacaatgaa 3398482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 306
Target Start/End: Complemental strand, 31176275 - 31176086
Alignment:
Q  117 tgatattgtttccaacttggtaaaacttacatcatatagatcattnnnnnnnnntcttaattcttgagtcagttgaatctctgatcggcattgaatccaa 216  Q
    |||| ||||||||||||  |||||| | ||||||||||||||||          ||||||||||||||| |||||| |||||||  | ||||||| ||||    
T  31176275 tgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtgacattgaacccaa 31176176  T
Q  217 acacttctaagttttgaaaggttgggaagcattggtgattgatagcccatattgttagtagttacatccaaggaaactagtgacaatgaa 306  Q
    |||| || ||| |||||||||  || |||||| |||||||||||| ||||||| ||| |   ||||||||| |||||||| |||||||||    
T  31176175 acacatcgaagctttgaaaggacggtaagcatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaa 31176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 3375424 - 3375369
Alignment:
Q  178 tcttgagtcagttgaatctctgatcggcattgaatccaaacacttctaagttttga 233  Q
    |||||||| ||| ||||||||||  ||||||||| ||||||||||||| |||||||    
T  3375424 tcttgagttagtcgaatctctgagtggcattgaacccaaacacttctatgttttga 3375369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 3262300 - 3262380
Alignment:
Q  14 gaacctgtgatatgttcttgccaagagtgttgatggccatgctacaacttcctaatccaatcaaaagcgatctccaggaaa 94  Q
    |||||||||||||| |||| |||||||| |||||| | | |   |||||||||| || |||||| ||||||||| ||||||    
T  3262300 gaacctgtgatatgctctttccaagagttttgatgactacgtggcaacttcctattctaatcaatagcgatctcgaggaaa 3262380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 7164485 - 7164573
Alignment:
Q  177 ttcttgagtcagttgaatctctgatcggcattgaatccaaacacttctaagttttgaaaggttgggaagcattggtgattgatagccca 265  Q
    ||||||||| |||||||  | ||| || ||||| | ||||||| ||||||||||||||||| |  ||| |||||||||| || ||||||    
T  7164485 ttcttgagttagttgaacttttgaccgacattgtacccaaacagttctaagttttgaaaggctacgaatcattggtgatagaaagccca 7164573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 306
Target Start/End: Complemental strand, 20812710 - 20812516
Alignment:
Q  112 gcatgtgatattgtttccaacttggtaaaacttacatcatatagatcattnnnnnnnnntcttaattcttgagtcagttgaatctctgatcggcattgaa 211  Q
    ||||||||| ||||||||||||  |||||| | ||||||||||||||||          ||||||||||||||| |||||| |||||||  |||||||||    
T  20812710 gcatgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaatatatcttcttaattcttgagtaagttgattctctgagtggcattgaa 20812611  T
Q  212 tccaaacacttctaagttttgaaaggttgggaagcattggtgattgatagcccatattgttagtagttacatccaaggaaactagtgacaatgaa 306  Q
     |||||||| || ||| ||||| |||  || |||||| |||||||||||  ||||||| ||| |   ||||||||| |||||||| |||||||||    
T  20812610 accaaacacatcgaagctttgataggacggtaagcatcggtgattgatattccatattattactctctacatccaaagaaactagagacaatgaa 20812516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 306
Target Start/End: Complemental strand, 20839064 - 20838871
Alignment:
Q  113 catgtgatattgtttccaacttggtaaaacttacatcatatagatcattnnnnnnnnntcttaattcttgagtcagttgaatctctgatcggcattgaat 212  Q
    |||||||| ||||||||||||  |||||| | ||||||||||||||||          ||||||||||||||| |||||| |||||||  |||||||||     
T  20839064 catgtgatgttgtttccaactcagtaaaattcacatcatatagatcatcaataaatcttcttaattcttgagtaagttgattctctgagtggcattgaaa 20838965  T
Q  213 ccaaacacttctaagttttgaaaggttgggaagcattggtgattgatagcccatattgttagtagttacatccaaggaaactagtgacaatgaa 306  Q
    |||||||| || ||| ||||| |||  || || ||| |||||||||||| ||||||| ||| |   ||||||||| |||||||| |||||||||    
T  20838964 ccaaacacatcgaagctttgataggacggtaaccatcggtgattgatagtccatattattactctctacatccaaagaaactagagacaatgaa 20838871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 12598886 - 12599013
Alignment:
Q  178 tcttgagtcagttgaatctctgatcggcattgaatccaaacacttctaagttttgaaaggttgggaagcattggtgattgatagcccatattgttagtag 277  Q
    ||||||||  |||||||||||||  ||||||||| ||||||||||||||||||||| ||  | | ||| | || |||| ||||||||||||| ||| |      
T  12598886 tcttgagttggttgaatctctgagtggcattgaacccaaacacttctaagttttgagagacttgtaagtactgatgatcgatagcccatattattactct 12598985  T
Q  278 ttacatccaaggaaactagtgacaatga 305  Q
    || |||||||||| ||||  ||||||||    
T  12598986 ttgcatccaaggacactaaagacaatga 12599013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 12598803 - 12598838
Alignment:
Q  13 agaacctgtgatatgttcttgccaagagtgttgatg 48  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12598803 agaacctgtgatatgttcttgccaagagtgtcgatg 12598838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 32410919 - 32410982
Alignment:
Q  174 taattcttgagtcagttgaatctctgatcggcattgaatccaaacacttctaagttttgaaagg 237  Q
    |||||||||||| |||||||||| ||| |||||||| | ||||||| |||| |||| |||||||    
T  32410919 taattcttgagttagttgaatctttgagcggcattgtacccaaacagttctgagttgtgaaagg 32410982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 31059636 - 31059733
Alignment:
Q  171 tcttaattcttgagtcagttgaatctctgatcggcattgaatccaaacacttctaagttttgaaaggttgggaagcattggtgattgatagcccatatt 269  Q
    ||||||||||||||| ||||||||||||||  ||||||| | |||| || |||||  |||||||||| ||  |||| |||||||| |||| | ||||||    
T  31059636 tcttaattcttgagttagttgaatctctgagtggcattg-acccaagcaattctatattttgaaaggatgataagcgttggtgatagatacctcatatt 31059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University