View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_high_12 (Length: 310)
Name: NF14742_high_12
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 32157164 - 32156977
Alignment:
| Q |
1 |
aagaagaatttgcaaaatggtaaagctaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcga |
100 |
Q |
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| T |
32157164 |
aagaagaatttgcaaaatggtaaagccaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttggc |
32157065 |
T |
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| Q |
101 |
tcatttctcaagcattggatggagcttccataattgatataaagaggacacagattcaagatgacttacttgtaattcctaataattc |
188 |
Q |
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| T |
32157064 |
tcatttctcaagcattggatggagcttccataattgatataaagaggacacaaattcaagatgacttacttgtaattcctaataattc |
32156977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 32156930 - 32156829
Alignment:
| Q |
196 |
agagaagatgttatttgaagtttttgaaaatgtatttgaaaaaacagattgaatattttttgcaatatgtgcatatagaacattatgaagcttattattt |
295 |
Q |
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| T |
32156930 |
agagaagatgttatttgaagtttttgaaaatgtatttgaaaaaacagattgaatattttttgcaatatgtgcatatagaacattatgaagcttattattt |
32156831 |
T |
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| Q |
296 |
ct |
297 |
Q |
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|| |
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| T |
32156830 |
ct |
32156829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 27359355 - 27359498
Alignment:
| Q |
40 |
tatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcgatcatttctcaagcattggatggagcttccataattgata |
139 |
Q |
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| T |
27359355 |
tatatagaattggattttccagtggaccctattactgaactcaattttgatgatacttcactcatttctgaagcattgggtggtgcttctataattgata |
27359454 |
T |
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| Q |
140 |
taaagaggacacagattcaagatgacttacttgtaattcctaat |
183 |
Q |
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| T |
27359455 |
taaagaggacactgattcaagataacatacttgtaattcctaat |
27359498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 32167781 - 32167637
Alignment:
| Q |
6 |
gaatttgcaaaatggtaaagctaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcgatcatt |
105 |
Q |
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||||||||| || ||| ||||| || || || ||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||| ||||| |
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| T |
32167781 |
gaatttgcagaacggtgaagctccggttggattttatattgaattggattttcctgctgaccctattgcagaattcaattctaatgacacttcactcatt |
32167682 |
T |
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| Q |
106 |
tctcaagcattggatggagcttccataattgatataaagaggaca |
150 |
Q |
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| T |
32167681 |
tctggagcattgaatggtgcttccattattgatataaagaggaca |
32167637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 27348539 - 27348471
Alignment:
| Q |
112 |
gcattggatggagcttccataattgatataaagaggacacagattcaagatgacttacttgtaattcct |
180 |
Q |
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| T |
27348539 |
gcattgaatggtgcttccattattgatatgaagaggacagaatttgcagatgatttacttgtaattcct |
27348471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 44291283 - 44291441
Alignment:
| Q |
23 |
aagctaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcgatcatttctcaagcattggatgg |
122 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||| || |||| | ||||| || || | ||| | |||||| || |||| || |
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| T |
44291283 |
aagctaaggatgtattttatgttgaattggattttcctgctgacccaatttcagaactaaaatttgatgatatttcacttatttctggagtattgagtga |
44291382 |
T |
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| Q |
123 |
agcttccataattgatataaagaggacacagattcaagatgacttacttgtaattccta |
181 |
Q |
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|||||||| ||||| | ||||||||| |||||||||||||||| |||||||||||| |
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| T |
44291383 |
ggcttccattgttgatgtgaagaggacagagattcaagatgacttgattgtaattccta |
44291441 |
T |
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