View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_high_18 (Length: 258)
Name: NF14742_high_18
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_high_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 9486658 - 9486425
Alignment:
| Q |
27 |
taaaaggtcataatacaagggttatgctaacataatgccaatttgattcaagctattgcttgtgccgcaaattagctnnnnnnnn--tccaacgacagaa |
124 |
Q |
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| T |
9486658 |
taaaaggtcataatacaagggttatgctaacataatgccaatttgattcaagctattgcttgtgccgcaaattagctaaaaaaaaaatccaacgagagaa |
9486559 |
T |
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| Q |
125 |
aaattccaaggtgcttattcttgaatttacatttattttcctctaatgacactaatgggattttaattcagaatatgatttaatatttatctttttaaca |
224 |
Q |
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| T |
9486558 |
aaattccaaggtgcttattcttgaatttacatttattttcctctaacgacactaatgggattttaattcagaatatgatttaatatttgtctttttaaca |
9486459 |
T |
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| Q |
225 |
ctagctcaaatttaagaagttcaaatcattctac |
258 |
Q |
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| T |
9486458 |
ctagctcaaattcaagaagttcaaatcattctac |
9486425 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 36574877 - 36574936
Alignment:
| Q |
121 |
agaaaaattccaaggtgcttattcttgaatttacatttattttcctctaatgacactaat |
180 |
Q |
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| T |
36574877 |
agaaaaagcccaaggtgcttattcttgaatttaaatttatttccctttaatgacactaat |
36574936 |
T |
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