View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14742_high_22 (Length: 237)
Name: NF14742_high_22
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41169180 - 41169403
Alignment:
| Q |
1 |
ttcaccaaccatccacttaatataactaagcacgattttaaacgccattaacaatatttttcatgtgttcaaatatacaagaatatctattaacaatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41169180 |
ttcaccaaccatccacttaatataactaaccacgattttaaacgccattaacaatatttttcatgtgttcaaatatacaagaatatctattaacaatatt |
41169279 |
T |
|
| Q |
101 |
gttccaatgtaaatgatatttaggcgttaaaataaaaatgatactcattaaccatag----tttttattttattttaaatatacacataaaatgacatta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
41169280 |
gttccaatgtaaatgatatttaggcgttaaaataaaaatgatactcattaaccatagtttttttttttttttttttaaatatacacataaaatgacatta |
41169379 |
T |
|
| Q |
197 |
ctaaacaactattgtcccttcaca |
220 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
41169380 |
ctaaacaactatcgtcccttcaca |
41169403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University