View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14742_high_27 (Length: 203)

Name: NF14742_high_27
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14742_high_27
NF14742_high_27
[»] chr4 (2 HSPs)
chr4 (18-94)||(6800306-6800384)
chr4 (23-105)||(6804677-6804761)
[»] chr5 (3 HSPs)
chr5 (18-140)||(34154030-34154151)
chr5 (18-71)||(41361370-41361425)
chr5 (18-92)||(41038166-41038243)
[»] chr1 (1 HSPs)
chr1 (61-140)||(21431081-21431156)
[»] scaffold0635 (1 HSPs)
scaffold0635 (62-105)||(8415-8458)
[»] chr3 (1 HSPs)
chr3 (62-93)||(53833564-53833595)
[»] chr2 (1 HSPs)
chr2 (62-105)||(10038612-10038655)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6800306 - 6800384
Alignment:
Q  18 cagttggcctcaagactagtgctc--caggatacaacagctcttctcactaacactgcacgtgaaatagcaagggcaca 94  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6800306 cagttggcctcaagactagtgctctccaggatacaacagctctcctcactaacactgcacgtgaaatagcaagggcaca 6800384  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 6804677 - 6804761
Alignment:
Q  23 ggcctcaagactagtgctc--caggatacaacagctcttctcactaacactgcacgtgaaatagcaagggcacaggaacaactat 105  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6804677 ggcctcaagattagtgctctccagaatacaacagctcttctcactaacactgcacgtgaaatagcaagggcacgggaacaactat 6804761  T

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Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 34154030 - 34154151
Alignment:
Q  18 cagttggcctcaagactagtgctc--caggatacaacagct-cttctcactaacactgcacgtgaaatagcaagggcacaggaacaactatattggatgc 114  Q
    |||||||||||||  |||||||||  ||||||||||||||  ||| ||||||||||||||||||||  ||||||||||||||||| ||  ||||||||      
T  34154030 cagttggcctcaaagctagtgctctccaggatacaacagccacttttcactaacactgcacgtgaaccagcaagggcacaggaaccac--tattggat-- 34154125  T
Q  115 gctcatgggaacttaattgttatttg 140  Q
    ||||||||||||||||||||||||||    
T  34154126 gctcatgggaacttaattgttatttg 34154151  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41361425 - 41361370
Alignment:
Q  18 cagttggcctcaagactagtgctc--caggatacaacagctcttctcactaacact 71  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  41361425 cagttggcctcaagactagtgctctccaggatacaacagctcttctcactaacact 41361370  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 41038166 - 41038243
Alignment:
Q  18 cagttggcctcaagactagtgctc--caggatacaacagct-cttctcactaacactgcacgtgaaatagcaagggca 92  Q
    |||||||||||||  |||||||||  ||||||||||||||  |||||| |||||||||||||| || |||||||||||    
T  41038166 cagttggcctcaaagctagtgctcttcaggatacaacagccacttctcgctaacactgcacgttaactagcaagggca 41038243  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 21431081 - 21431156
Alignment:
Q  61 tcactaacactgcacgtgaaatagcaagggcacaggaacaactatattggatgcgctcatgggaacttaattgttatttg 140  Q
    |||||||||||| | ||||| |||||||||||||||||| ||  | ||||||  ||||||||||||||||||||||||||    
T  21431081 tcactaacactgtatgtgaactagcaagggcacaggaaccac--tcttggat--gctcatgggaacttaattgttatttg 21431156  T

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Target: scaffold0635 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 8415 - 8458
Alignment:
Q  62 cactaacactgcacgtgaaatagcaagggcacaggaacaactat 105  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||    
T  8415 cactaacactgcacgtgaactagtaagggcacatgaacaactat 8458  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 93
Target Start/End: Complemental strand, 53833595 - 53833564
Alignment:
Q  62 cactaacactgcacgtgaaatagcaagggcac 93  Q
    ||||||||||||||||||||||||||||||||    
T  53833595 cactaacactgcacgtgaaatagcaagggcac 53833564  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 10038655 - 10038612
Alignment:
Q  62 cactaacactgcacgtgaaatagcaagggcacaggaacaactat 105  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||    
T  10038655 cactaacactgcacgtgaactagtaagggcacatgaacaactat 10038612  T

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