View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_high_4 (Length: 442)
Name: NF14742_high_4
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 3006783 - 3006409
Alignment:
| Q |
1 |
gttaccgagtggcaagaaggctattgatgtaaaatcgcactttagaatttcatgagcaatccctgaacaacttaatctagtagggctattctgatggtga |
100 |
Q |
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| T |
3006783 |
gttaccaagtggcaagaaggctgttgatgtaaaatcgcactttagaatttcatgagcaatccctgaacaacttaatctagtaggactattctgatggtga |
3006684 |
T |
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| Q |
101 |
ctagtgtggagataaaattgataggaggagcacaattagttatgtgtttaaggtacaaggagatcgtatctcatggccatataagaagcaattaatggtt |
200 |
Q |
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| T |
3006683 |
ctagtgtggagataaaattgataggaggagcacaattagttatgtgtttaaggtacaaggagatcgtatctcatggccatataagaagcaattaatggtt |
3006584 |
T |
|
| Q |
201 |
tc-tttatcaagttatgaagaataatatgtagtaggatcttcaggtgcatgtcaagctaactactggctacaaaatgtgatggaagatttgacgataaaa |
299 |
Q |
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| T |
3006583 |
tcttttatcaagttatgaagaataatatggagtaggatcttcagttgcatgtcaagctaactacgggctacaaaatgtgatggaagatttgacgataaaa |
3006484 |
T |
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| Q |
300 |
ctgaagcatcaagtaaaattattgattattgatatataacaagtatgctattgctaagaatcctatagattaagg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3006483 |
ctgaagcatcaagtaaaattattgattattgatatataacaagtatgctattgctaagaatcccatagattaagg |
3006409 |
T |
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