View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_high_7 (Length: 402)
Name: NF14742_high_7
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 32 - 388
Target Start/End: Complemental strand, 34935497 - 34935143
Alignment:
| Q |
32 |
caatagtcaaaatagaagggaaaaaacttacaaacatggtaattttttcatataacaaaagttgaataaaaataaacatgcaattc------------at |
119 |
Q |
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| T |
34935497 |
caatagtcaaaataggagggaaaaaacttacaaacatggtaattttttcatataa-aaaagttaaataaaaataaacatgcaattcgtttaatcaaccat |
34935399 |
T |
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| Q |
120 |
tataaaatggtaaagtggttaatacacatatgagacatcattaacaagcatgatatgagacaagcataatagaggtgaaaattatacatatataaacatg |
219 |
Q |
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| T |
34935398 |
tataaaatggtaaagtggttaatacacatatgagacatcattaacaagcatgatat-----------aatagaggtgaaaattata--tatataaacatg |
34935312 |
T |
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| Q |
220 |
aaatgaggcatgcatgcatgaagagataatagatataaaataccttgacgactagggttggggcatttgaagccatcattaacaagcttaatagttttag |
319 |
Q |
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| T |
34935311 |
aaatgaggcatgcatgcatgaagagataataaatataaaataccttgacgactagggttggggcatttgaagccatcattaacaagcttaatagttttag |
34935212 |
T |
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| Q |
320 |
gcataggtttaccacttttaccaagtccaaactgagtcccactcatctgaatcctaacagcgatttgat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34935211 |
gcataggtttaccacttttaccaagtccaaactgagtcccactcatctgaatcctaacagcgatttgat |
34935143 |
T |
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