View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_1 (Length: 699)
Name: NF14742_low_1
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 54606347 - 54606544
Alignment:
| Q |
11 |
gtgagatgaaaagaaagaagttacaagtagattagagttgaagtcaaaccagaatataaaaggttcaatgtttgagatacaggatgctttttcattgttt |
110 |
Q |
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| T |
54606347 |
gtgagaagaaaagaaagaagttacaagtagattagagttgaagtcaaaccataatataaaaggttcaatgtttgagatacaggatgccttttcgttgctt |
54606446 |
T |
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| Q |
111 |
tgcgagacaattcatgtatgcaatgattaacagttttaaacaagaaatgtggatttccatttcttttcttgggaaccaaaggaaatttggataatgct |
208 |
Q |
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| T |
54606447 |
tgtgagacaattcacgtatgcaatgattaacagttttaaacaagaaatgtggatttccatttcttttcttcggaaccaaaggaaatttggataatgct |
54606544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 285 - 494
Target Start/End: Original strand, 54606651 - 54606858
Alignment:
| Q |
285 |
ggaagtttttactacttacgtactatcgatctaagctaaaaatatagtattacattaactagcagcagtcccagttaaatgtttttacattggcacctgg |
384 |
Q |
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| T |
54606651 |
ggaagtttttactacttacgtactatcgatctaagctaaaaatatagtattacattaactagcagcagtcccagttaaatgtttttacattggcacctgg |
54606750 |
T |
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| Q |
385 |
cttc-----aaaggttgtattctttctgtgtattttttgaacagatttccttcaacnnnnnnnttccctaaaaaacatgtccctaattaattagccttcc |
479 |
Q |
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| T |
54606751 |
cttcaaattaaaggttgtattctttctgtgtattttttgaacagatttccttcaacaaaaaaattccctcaaaaacatgtccc-------ttagccttcc |
54606843 |
T |
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| Q |
480 |
cttaaccacaatccc |
494 |
Q |
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| T |
54606844 |
cttaaccacaatccc |
54606858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 540 - 679
Target Start/End: Original strand, 54607192 - 54607335
Alignment:
| Q |
540 |
ttgttaaaacttgtaagactataaccgtgagtagttgacattgcctcatattatacatataagcaaactcac----tcactgtgacnnnnnnnctcttcc |
635 |
Q |
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| T |
54607192 |
ttgttaaaacttgtaagactataactgtgagtagttgacattgcctcatattatacatataagcaaactcactcattcactatgactttttttttcttcc |
54607291 |
T |
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| Q |
636 |
tccaaatcgtgtaagtccnnnnnnncctagcaccacctaacgta |
679 |
Q |
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| T |
54607292 |
tccaaatcgtgtaagtcctttttttcctagcaccacctaacgta |
54607335 |
T |
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