View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14742_low_11 (Length: 385)

Name: NF14742_low_11
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14742_low_11
NF14742_low_11
[»] chr4 (20 HSPs)
chr4 (49-189)||(26355292-26355432)
chr4 (240-366)||(26355167-26355294)
chr4 (256-309)||(39232801-39232854)
chr4 (244-309)||(4206206-4206272)
chr4 (244-309)||(4206886-4206952)
chr4 (244-309)||(39232103-39232169)
chr4 (244-309)||(51539821-51539887)
chr4 (244-309)||(51540508-51540574)
chr4 (243-307)||(29379724-29379789)
chr4 (244-307)||(2520306-2520370)
chr4 (244-307)||(2519559-2519622)
chr4 (244-309)||(49603417-49603483)
chr4 (244-309)||(49604095-49604161)
chr4 (244-307)||(29380473-29380537)
chr4 (256-305)||(46513686-46513736)
chr4 (251-307)||(14090722-14090778)
chr4 (262-306)||(2528689-2528733)
chr4 (246-288)||(25699311-25699353)
chr4 (254-286)||(441328-441360)
chr4 (254-309)||(47594188-47594244)
[»] chr6 (13 HSPs)
chr6 (110-307)||(23949922-23950114)
chr6 (244-309)||(304973-305039)
chr6 (244-309)||(305646-305712)
chr6 (244-309)||(644100-644166)
chr6 (244-309)||(33775568-33775634)
chr6 (244-309)||(22509755-22509819)
chr6 (110-290)||(23949148-23949321)
chr6 (244-306)||(33776247-33776310)
chr6 (244-309)||(644779-644845)
chr6 (244-307)||(26275430-26275494)
chr6 (244-306)||(19803381-19803444)
chr6 (253-309)||(8208111-8208167)
chr6 (244-290)||(26276178-26276224)
[»] chr8 (14 HSPs)
chr8 (244-309)||(28824803-28824868)
chr8 (244-309)||(28824124-28824190)
chr8 (244-309)||(29555507-29555573)
chr8 (244-309)||(29556193-29556259)
chr8 (244-309)||(38376206-38376272)
chr8 (244-309)||(44445967-44446033)
chr8 (243-307)||(39774315-39774380)
chr8 (244-307)||(5157230-5157294)
chr8 (244-309)||(5156551-5156617)
chr8 (244-309)||(44446645-44446711)
chr8 (264-309)||(38376912-38376957)
chr8 (244-307)||(5157974-5158038)
chr8 (244-307)||(39773567-39773631)
chr8 (256-307)||(14857949-14858001)
[»] chr7 (14 HSPs)
chr7 (244-309)||(47942011-47942076)
chr7 (244-309)||(33256407-33256472)
chr7 (248-309)||(22377353-22377415)
chr7 (244-309)||(33255720-33255786)
chr7 (244-309)||(47942689-47942755)
chr7 (244-309)||(47948119-47948185)
chr7 (243-307)||(7331861-7331926)
chr7 (244-307)||(7331113-7331177)
chr7 (256-307)||(34151599-34151651)
chr7 (256-307)||(34175473-34175525)
chr7 (244-307)||(16959596-16959658)
chr7 (256-307)||(31724186-31724238)
chr7 (244-307)||(16941089-16941151)
chr7 (244-288)||(48843199-48843244)
[»] chr5 (13 HSPs)
chr5 (244-309)||(2600832-2600897)
chr5 (244-309)||(2601518-2601583)
chr5 (244-309)||(4275564-4275630)
chr5 (244-309)||(4276250-4276316)
chr5 (244-309)||(31230116-31230182)
chr5 (243-307)||(3341587-3341652)
chr5 (243-307)||(3358496-3358561)
chr5 (244-309)||(31229429-31229495)
chr5 (243-307)||(3342335-3342400)
chr5 (243-307)||(3359244-3359309)
chr5 (244-307)||(11377286-11377349)
chr5 (256-307)||(11376943-11376995)
chr5 (251-302)||(5233770-5233822)
[»] chr3 (13 HSPs)
chr3 (244-309)||(47861776-47861841)
chr3 (251-309)||(30733610-30733669)
chr3 (244-309)||(11503677-11503743)
chr3 (244-309)||(47862462-47862528)
chr3 (244-309)||(48222324-48222390)
chr3 (244-309)||(48223004-48223070)
chr3 (244-307)||(6588547-6588610)
chr3 (244-306)||(53302951-53303014)
chr3 (95-309)||(16073637-16073844)
chr3 (244-306)||(1194099-1194162)
chr3 (244-309)||(11504363-11504429)
chr3 (244-290)||(53303635-53303681)
chr3 (256-290)||(25749094-25749128)
[»] chr1 (19 HSPs)
chr1 (244-309)||(250362-250427)
chr1 (244-309)||(11625286-11625351)
chr1 (243-307)||(35813295-35813359)
chr1 (244-309)||(36180409-36180475)
chr1 (244-309)||(47708508-47708574)
chr1 (243-307)||(9088439-9088504)
chr1 (244-309)||(36179716-36179781)
chr1 (243-307)||(45881505-45881570)
chr1 (244-307)||(35814029-35814093)
chr1 (244-307)||(45880757-45880821)
chr1 (244-309)||(249682-249748)
chr1 (256-309)||(11625984-11626038)
chr1 (251-307)||(9087691-9087748)
chr1 (243-307)||(32516812-32516877)
chr1 (244-288)||(32517561-32517605)
chr1 (251-305)||(27039101-27039155)
chr1 (256-309)||(51588632-51588684)
chr1 (251-302)||(42308902-42308954)
chr1 (256-307)||(51590774-51590826)
[»] chr2 (12 HSPs)
chr2 (244-309)||(1389085-1389151)
chr2 (244-309)||(22424720-22424786)
chr2 (243-307)||(21647602-21647667)
chr2 (244-307)||(29982153-29982217)
chr2 (244-307)||(29982902-29982966)
chr2 (244-307)||(37644407-37644471)
chr2 (244-309)||(22424033-22424099)
chr2 (246-307)||(37645158-37645220)
chr2 (243-307)||(21648350-21648415)
chr2 (243-307)||(15321814-15321880)
chr2 (110-191)||(31077848-31077928)
chr2 (256-307)||(15167824-15167876)
[»] scaffold0181 (2 HSPs)
scaffold0181 (243-305)||(18059-18122)
scaffold0181 (244-307)||(17311-17375)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 26355432 - 26355292
Alignment:
Q  49 aaaaataaaacaagtatgtaataatgttaaaaaagaatatgtgaaatgtgcatccggactctaactaccgtatgtgttaaaagtgcaaattcgaaattgt 148  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26355432 aaaaaaaaaacaagtatgtaataatgttaaaaaagaaaatgtgaaatgtgcatccggactctaactaccgtacgtgttaaaagtgcaaattcgaaattgt 26355333  T
Q  149 gcatccggtagatacatttccggagctgtaaaatgtggaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26355332 gcatccggtagatacatttccggagctgtaaaatgtggaaa 26355292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 26355294 - 26355167
Alignment:
Q  240 aaagtataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt-nnnnnnnngtgtgataaattgagcaagcc 338  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  26355294 aaagtataaaagttaattttgtattattagggggcctaaacagatattgggaggcctaaaaagcaatcttaaaaaaagtgtgtgataaattgagcaagcc 26355195  T
Q  339 caataacagttgagtttagggttcaagc 366  Q
    ||||||||||||||||||||||||||||    
T  26355194 caataacagttgagtttagggttcaagc 26355167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 39232801 - 39232854
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39232801 ttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 39232854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 4206272 - 4206206
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4206272 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 4206206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 4206886 - 4206952
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4206886 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 4206952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 39232169 - 39232103
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  39232169 tataaaggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatctt 39232103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 51539887 - 51539821
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  51539887 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 51539821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 51540508 - 51540574
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  51540508 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 51540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 29379789 - 29379724
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  29379789 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 29379724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 2520306 - 2520370
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  2520306 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 2520370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 2519622 - 2519559
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  2519622 tataaaggttatttttgtatttttaaggggcctaaagagatattggagggcctaaaaagcaatc 2519559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 49603483 - 49603417
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  49603483 tataaaggttatttttgtatttttagggggcttaaagagatattgggggggcctaaaaagcaatctt 49603417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 49604095 - 49604161
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  49604095 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatctt 49604161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 29380473 - 29380537
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||||    
T  29380473 tataaaggttatttttgtatttttaggggacctaaagagatattgagggggcctaaaaagcaatc 29380537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 46513686 - 46513736
Alignment:
Q  256 ttttgtatttttagggggcctaaagagata-ttgggaggcctaaaaagcaa 305  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  46513686 ttttgtatttttagggggcctaaagagatatttggggggcctaaaaagcaa 46513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 14090778 - 14090722
Alignment:
Q  251 gttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    |||| ||| |||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  14090778 gttattttcgtattttttgggggcctaaatagatattgggagacctaaaaagcaatc 14090722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 2528689 - 2528733
Alignment:
Q  262 atttttagggggcctaaagagatattgggaggcctaaaaagcaat 306  Q
    ||||||||||| |||||||||||||| || |||||||||||||||    
T  2528689 atttttaggggacctaaagagatattagggggcctaaaaagcaat 2528733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 25699353 - 25699311
Alignment:
Q  246 taaaagttaattttgtatttttagggggcctaaagagatattg 288  Q
    |||| |||| ||| |||||||||||||||||||||||||||||    
T  25699353 taaaggttattttcgtatttttagggggcctaaagagatattg 25699311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 441360 - 441328
Alignment:
Q  254 aattttgtatttttagggggcctaaagagatat 286  Q
    ||||||||| |||||||||||||||||||||||    
T  441360 aattttgtaattttagggggcctaaagagatat 441328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 47594188 - 47594244
Alignment:
Q  254 aattttgtatttttagggggcctaaagagatat-tgggaggcctaaaaagcaatctt 309  Q
    |||||| || |||||||||||||||||||| ||  ||||||||||||||| ||||||    
T  47594188 aattttataattttagggggcctaaagagacatgagggaggcctaaaaaggaatctt 47594244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 110 - 307
Target Start/End: Original strand, 23949922 - 23950114
Alignment:
Q  110 taactaccgtatgtgttaaaagtgcaaattcgaaattgtgcatccggtagatacatttccggagctgtaaaatgtggaaaatgaaaatgaactatctcat 209  Q
    ||||||| |||||||||||| ||| |||||| ||| |||||||| ||||| |||||| |||||| || |||||||||||||| ||| || |||| |  ||    
T  23949922 taactactgtatgtgttaaatgtggaaattccaaaatgtgcatctggtagttacatt-ccggaggtgcaaaatgtggaaaattaaattgcactaccggat 23950020  T
Q  210 tttattttatgtaccagagactccggttttaaagtataaaagttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaagcaatc 307  Q
    |||||     |||||  ||  ||  ||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  23950021 tttat-----gtaccgaaggttctagtttttaattataaaggttaattttgtatttttagggggcctaaagagatattggaggagcctaaaaagcaatc 23950114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 305039 - 304973
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  305039 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 304973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 305646 - 305712
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  305646 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 305712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 644166 - 644100
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  644166 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 644100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 33775634 - 33775568
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33775634 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 33775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 22509819 - 22509755
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  22509819 tataaacgttatttttgtatttttagggggtctaaagagatattggg-ggcctaaaaagcaatctt 22509755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 23949321 - 23949148
Alignment:
Q  110 taactaccgtatgtgttaaaagtgcaaattcgaaattgtgcatccggtagatacatttccggagctgtaaaatgtggaaaatgaaaatgaactatctcat 209  Q
    |||||||||||||||||||| ||| |||||| ||| |||| ||||||||| || | |||||||| || |||||||| ||||| ||| ||||||     |     
T  23949321 taactaccgtatgtgttaaatgtggaaattccaaaatgtgtatccggtagttata-ttccggaggtgcaaaatgtgaaaaattaaattgaact-----ac 23949228  T
Q  210 tttattttatgtaccagagactccggttttaaagtataaaagttaattttgtatttttagggggcctaaagagatattggg 290  Q
    |  |||||||| |||  || ||| | |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||    
T  23949227 tggattttatgcaccgaaggctctgatttttaattataaaggttaattttgtatttttaagggg-ctaaagagatattggg 23949148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 33776247 - 33776310
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaat 306  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  33776247 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 33776310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 644779 - 644845
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  644779 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggtctaaaaagcaatctt 644845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 26275494 - 26275430
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| |||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  26275494 tataaaggttatttttgtatttttagagggcctaaagagatattgagggggcctaaaaagcaatc 26275430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 19803444 - 19803381
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaat 306  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  19803444 tataaaggttatttttgtattttcagggggcctaaagagatattgagggggcctaaaaagcaat 19803381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 8208167 - 8208111
Alignment:
Q  253 taattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||||| |||||||||| ||||||||||| | |||| ||||||||||||||||||    
T  8208167 taattttggatttttagggagcctaaagagaaactggggggcctaaaaagcaatctt 8208111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 26276178 - 26276224
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattggg 290  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||    
T  26276178 tataaaggttatttttgtatttttaggggacctaaagagatattggg 26276224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 28824803 - 28824868
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28824803 tataaaggttatttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 28824868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 28824190 - 28824124
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  28824190 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 28824124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 29555573 - 29555507
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  29555573 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 29555507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 29556193 - 29556259
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggagg-cctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  29556193 tataaaggttatttttgtatttttagggggcctaaagagatattggggggacctaaaaagcaatctt 29556259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 38376272 - 38376206
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  38376272 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 38376206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 44446033 - 44445967
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  44446033 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 44445967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 39774315 - 39774380
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  39774315 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 39774380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 5157230 - 5157294
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatc 307  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  5157230 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 5157294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 5156617 - 5156551
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  5156617 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagaaatctt 5156551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 44446645 - 44446711
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  44446645 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctgaaaagcaatctt 44446711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 38376912 - 38376957
Alignment:
Q  264 ttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  38376912 ttttagggggcctaaagagatattggggggcctaaaaagcaatctt 38376957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 5157974 - 5158038
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  5157974 tataaaggttatttttgtatttttaggaggcctaaagagatattgagggggcctaaaaagcaatc 5158038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 39773631 - 39773567
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  39773631 tataaaggttatttttgaatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 39773567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 14857949 - 14858001
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  14857949 ttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatc 14858001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 47942076 - 47942011
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47942076 tataaaggttatttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 47942011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 33256407 - 33256472
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  33256407 tataaaggttatttttgtacttttagggggcctaaagagatattggggggcctaaaaagcaatctt 33256472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 22377353 - 22377415
Alignment:
Q  248 aaagttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaagcaatctt 309  Q
    |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  22377353 aaagttaattttgtatttttagggggcctaaagagatactggaggggcctaaaaagcaatctt 22377415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 33255786 - 33255720
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33255786 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 33255720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 47942689 - 47942755
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  47942689 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 47942755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 47948119 - 47948185
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  47948119 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 47948185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 7331861 - 7331926
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  7331861 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 7331926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 7331177 - 7331113
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  7331177 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 7331113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 34151651 - 34151599
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  34151651 ttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatc 34151599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 34175473 - 34175525
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  34175473 ttttgtatctttagggggcctaaagagatattgagggggcctaaaaagcaatc 34175525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 16959596 - 16959658
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    ||||||||||| |||  ||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  16959596 tataaaagttattttcatatttttagggagcctaaagagatattggg-ggcgtaaaaagcaatc 16959658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 31724186 - 31724238
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||||||||| |||||||||| |||||||| || ||||||||||||||||    
T  31724186 ttttgtatttttaaggggcctaaatagatattgagggggcctaaaaagcaatc 31724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 16941089 - 16941151
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    ||||||||||| |||  ||||||||||| ||||||||||||| |||| ||| ||||||||||||    
T  16941089 tataaaagttattttcatatttttagggagcctaaagagatactggg-ggcgtaaaaagcaatc 16941151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 48843244 - 48843199
Alignment:
Q  244 tataaaagttaatttt-gtatttttagggggcctaaagagatattg 288  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||    
T  48843244 tataaaggttatttttcgtatttttagggggcctaaagagatattg 48843199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 2600897 - 2600832
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2600897 tataaaggttatttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 2600832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 2601518 - 2601583
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  2601518 tataaaggttatttttgtatttttaggaggcctaaagagatattggggggcctaaaaagcaatctt 2601583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 4275630 - 4275564
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4275630 tataaaggttatttttgtatttttagggggcctaaagagatattaggggggcctaaaaagcaatctt 4275564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 4276250 - 4276316
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4276250 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 4276316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 31230116 - 31230182
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31230116 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 31230182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 3341652 - 3341587
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  3341652 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 3341587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 3358561 - 3358496
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  3358561 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 3358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 31229495 - 31229429
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  31229495 tataaaggttatttttgtacttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 31229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 3342335 - 3342400
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  3342335 gtataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatc 3342400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 3359244 - 3359309
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  3359244 gtataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatc 3359309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 11377349 - 11377286
Alignment:
Q  244 tataaaagttaatttt-gtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||||| ||||||||||||||||    
T  11377349 tataaaagttattttttgtatttttagggggaccaaagagatattggg-ggcctaaaaagcaatc 11377286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 11376995 - 11376943
Alignment:
Q  256 ttttgtatttttagggggc-ctaaagagatattgggaggcctaaaaagcaatc 307  Q
    ||||||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  11376995 ttttgtatttttaggggggaccaaagagatattggggggcctaaaaagcaatc 11376943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 5233822 - 5233770
Alignment:
Q  251 gttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaag 302  Q
    |||| |||||||||||||| ||||||||| ||||||||| | |||||||||||    
T  5233822 gttatttttgtatttttagagggcctaaaaagatattggaggggcctaaaaag 5233770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 47861841 - 47861776
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47861841 tataaaggttatttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 47861776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 30733669 - 30733610
Alignment:
Q  251 gttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaagcaatctt 309  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  30733669 gttaattttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatctt 30733610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 11503743 - 11503677
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  11503743 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 11503677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 47862462 - 47862528
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  47862462 tataaaggttatttttgtatttttagggggcctaaagagatattggaggggcctaaaaagcaatctt 47862528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 48222390 - 48222324
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  48222390 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 48222324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 48223004 - 48223070
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  48223004 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 48223070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 6588610 - 6588547
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| | || |||||||||||||    
T  6588610 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggctaaaaagcaatc 6588547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 53303014 - 53302951
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaat 306  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  53303014 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaat 53302951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 309
Target Start/End: Complemental strand, 16073844 - 16073637
Alignment:
Q  95 tgtgcatccggactctaactaccgtatgtgttaaaagtgcaaattcgaaattgtgcatccggtagatacatttccggagctgtaaaatgtggaaaatgaa 194  Q
    ||||| |||||||||||  ||||| | ||||||||| ||| | ||| |||   ||||||||||| ||||||  ||||||  ||||||||||||| |||||    
T  16073844 tgtgcctccggactctatgtaccggaagtgttaaaaatgcgatttcaaaaaactgcatccggtatatacata-ccggaggagtaaaatgtggaatatgaa 16073746  T
Q  195 aatgaactatctcattttattttatgtaccagagactccggttttaaagtataaaagttaattttgtatttttagggggcctaaagagatattgggaggc 294  Q
    ||||||| |||  |||||||     ||||  ||| ||||  ||   ||||| ||| ||||||||||||||||| ||||||| ||||||||||| || |||    
T  16073745 aatgaaccatcggattttat-----gtacaggaggctccaattcataagtacaaaggttaattttgtatttttggggggcccaaagagatatttgggggc 16073651  T
Q  295 ctaaaaagcaatctt 309  Q
    || ||||||||||||    
T  16073650 ct-aaaagcaatctt 16073637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 1194162 - 1194099
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaat 306  Q
    |||||| |||| |||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  1194162 tataaaggttatttttgtatttttggggggcctaaagagatattgagggggcctaaaaagcaat 1194099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 11504363 - 11504429
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggag-gcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||| |||||||||| |||||||||| | |||||||||||||||||    
T  11504363 tataaaggttatttttgtatttttaaggggcctaaaaagatattgggggagcctaaaaagcaatctt 11504429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 53303635 - 53303681
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattggg 290  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||    
T  53303635 tataaaggttatttttgtatttttagggggcctaaagagatattggg 53303681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 25749094 - 25749128
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattggg 290  Q
    |||||||||||||||||||||||| ||||||||||    
T  25749094 ttttgtatttttagggggcctaaaaagatattggg 25749128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 250362 - 250427
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  250362 tataaaggttatttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 250427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 11625351 - 11625286
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11625351 tataaatgttatttttgtatttttagggggcctaaagagatattggggggcctaaaaagcaatctt 11625286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 35813359 - 35813295
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  35813359 gtataaaggttatttttgtatttttagggggcctaaagagatattgaggggcctaaaaagcaatc 35813295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 36180409 - 36180475
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  36180409 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 36180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 47708508 - 47708574
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  47708508 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 47708574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 9088439 - 9088504
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  9088439 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 9088504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 36179781 - 36179716
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  36179781 tataaaggttatttttgtatttttaggaggcctaaagagatattgggggacctaaaaagcaatctt 36179716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 45881505 - 45881570
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  45881505 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 45881570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 35814029 - 35814093
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  35814029 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 35814093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 45880821 - 45880757
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  45880821 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 45880757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 249748 - 249682
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  249748 tataaaggttatttttgtatttttagggggtctaaagagatattgggggggcctaaaaagcaatctt 249682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 11625984 - 11626038
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  11625984 ttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 11626038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 9087748 - 9087691
Alignment:
Q  251 gttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  9087748 gttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 9087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 32516877 - 32516812
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||| | ||||||||||||| || ||||||||||||||||    
T  32516877 gtataaaggttatttttgtatttttaggggacttaaagagatattgagggggcctaaaaagcaatc 32516812  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 32517561 - 32517605
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg 288  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  32517561 tataaaggttatttttgtatttttagggggcctaaagagatattg 32517605  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 27039101 - 27039155
Alignment:
Q  251 gttaattttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaa 305  Q
    |||||||| ||||||||||||||| |||| |||||||||| |||||||| |||||    
T  27039101 gttaatttcgtatttttagggggcttaaaaagatattggggggcctaaagagcaa 27039155  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 51588684 - 51588632
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattgggaggcctaaaaagcaatctt 309  Q
    |||||||  |||||||||||| ||||||||||| || |||||||||||||||||    
T  51588684 ttttgtaactttagggggcctgaagagatattgaga-gcctaaaaagcaatctt 51588632  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 42308902 - 42308954
Alignment:
Q  251 gttaattttgtatttttagggggcctaaagagatattgg-gaggcctaaaaag 302  Q
    |||| ||||||||||||||| |||||||| ||||||||| | |||||||||||    
T  42308902 gttatttttgtatttttaggaggcctaaaaagatattggaggggcctaaaaag 42308954  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 51590774 - 51590826
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||||||| |||||||||||||||| || || |||||||||||||    
T  51590774 ttttgtagttttagggtgcctaaagagatattgtgggggtctaaaaagcaatc 51590826  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 1389085 - 1389151
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  1389085 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 1389151  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 22424720 - 22424786
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatctt 309  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  22424720 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatctt 22424786  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 21647667 - 21647602
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  21647667 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 21647602  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 29982217 - 29982153
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattggga-ggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  29982217 tataaaggttatttttgtatttttagggggcctaaagagatattgagagggcctaaaaagcaatc 29982153  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 29982902 - 29982966
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatc 307  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  29982902 tataaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 29982966  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 37644471 - 37644407
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  37644471 tataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaatc 37644407  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 22424099 - 22424033
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattgggag-gcctaaaaagcaatctt 309  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  22424099 tataaaggttatttttgtatttttaaggggcctaaagagatattgggggagcctaaaaagcaatctt 22424033  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 37645158 - 37645220
Alignment:
Q  246 taaaagttaattttgtatttttagggggcctaaagagatatt-gggaggcctaaaaagcaatc 307  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37645158 taaaggttatttttgtatttttagggggcctaaagagatattgggggggcctaaaaagcaatc 37645220  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21648350 - 21648415
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  21648350 gtataaaggttatttttgtatttttagggggtctaaagagatattgagggggcctaaaaagcaatc 21648415  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 15321880 - 15321814
Alignment:
Q  243 gtataaaagttaattttgt-atttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||||| || ||| ||||||||||||    
T  15321880 gtataaaggttatttttgttatttttagggggcctaaagagatattgagggggcttaaaaagcaatc 15321814  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 31077928 - 31077848
Alignment:
Q  110 taactaccgtatgtgttaaaagtgcaaattcgaaattgtgcatccggtagatacatttccggagctgtaaaatgtggaaaat 191  Q
    ||||| |||||||||||||| ||  |||||  ||| |||||||||||||| |||| |||||||| || ||||||||||||||    
T  31077928 taactgccgtatgtgttaaatgtagaaatttcaaaatgtgcatccggtagttaca-ttccggaggtgcaaaatgtggaaaat 31077848  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 15167824 - 15167876
Alignment:
Q  256 ttttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||||| |||||||||||||||||||||||| || || |||||||||||||    
T  15167824 ttttgtatctttagggggcctaaagagatattgagggggtctaaaaagcaatc 15167876  T

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Target: scaffold0181 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 18059 - 18122
Alignment:
Q  243 gtataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaa 305  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  18059 gtataaaggttatttttgtatttttagggggcctaaagagatattgagggggcctaaaaagcaa 18122  T

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Target: scaffold0181; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 17375 - 17311
Alignment:
Q  244 tataaaagttaattttgtatttttagggggcctaaagagatattg-ggaggcctaaaaagcaatc 307  Q
    |||||| |||| |||| ||||||||||||||||||||| |||||| || ||||||||||||||||    
T  17375 tataaaggttatttttatatttttagggggcctaaagaaatattgagggggcctaaaaagcaatc 17311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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