View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_12 (Length: 384)
Name: NF14742_low_12
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 18640571 - 18640926
Alignment:
| Q |
13 |
cacagatagatagtgaaaagagaattcttgcaatataagacctttgaaacgtgcgaaataggagacttgctgtagaagagagttaaatcttctgctgatg |
112 |
Q |
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| T |
18640571 |
cacagatagatagtgaaaagagaattcttgcaatataagacctttgaaacgtgcgaaataggagacttgctgtagaagagagttaaatcttctgctgatg |
18640670 |
T |
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| Q |
113 |
gtgcttcactaaagcaatctcttgcagttgttccaaaggcctctacatagcaccaatcaggtatatcagttgtgccaaccatcagtgcaaagttacaaac |
212 |
Q |
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| T |
18640671 |
gtgcttcactaaagcaatctcttgcagttgttccaaaggcctctacatagcaccaatcaggtatatcagttgtgccaaccatcattgcaaggttacaaac |
18640770 |
T |
|
| Q |
213 |
aggattaattgctgccgctgctacaaacttctcgggtgcctgcagtaattagaacaacaattatatcccataacatctgagaaaggtattacacctttat |
312 |
Q |
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| T |
18640771 |
aggattaattgctgccgctgctacaaacttctcgggtgcctgcagtaattagaacaacaattatatcccataacatctgagaaaggtattacacctttat |
18640870 |
T |
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| Q |
313 |
cccctattttgacaatattagtatcaccaataagtaagtaatttctaccacaaaat |
368 |
Q |
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| T |
18640871 |
cccctattttgacaatattagtatcaccaataagtaagtaatttctaccacaaaat |
18640926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 18629964 - 18630048
Alignment:
| Q |
161 |
agcaccaatcaggtatatcagttgtgccaaccatcagtgcaaagttacaaacaggattaattgctgccgctgctacaaacttctc |
245 |
Q |
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| T |
18629964 |
agcaccaatcaggaatatcagttgtaccaaccatcagctcaaggttacaaacaggattcctagcagctgctgcaacaaacttctc |
18630048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 15094075 - 15093991
Alignment:
| Q |
161 |
agcaccaatcaggtatatcagttgtgccaaccatcagtgcaaagttacaaacaggattaattgctgccgctgctacaaacttctc |
245 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||| | || || ||||| ||||||||||| |
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| T |
15094075 |
agcaccaatcaggaatatcagttgtaccaaccatcagcgcaaggttacaaacaggattcctagcagctgctgcaacaaacttctc |
15093991 |
T |
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