View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_13 (Length: 381)
Name: NF14742_low_13
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 27384375 - 27384237
Alignment:
| Q |
19 |
ggtgtttgagggtatttgaagcaagcaacatggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
118 |
Q |
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| T |
27384375 |
ggtgtttgagggtatttgaagcaagcaacgtggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
27384276 |
T |
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| Q |
119 |
atcaatgtgtcctgatctacactcttaatttttgagtaag |
158 |
Q |
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| T |
27384275 |
atcaatgtgttctgatctacact-ttaaattttgagtaag |
27384237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 27390865 - 27390719
Alignment:
| Q |
19 |
ggtgtttgagggtatttgaagcaagcaacatggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
118 |
Q |
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| T |
27390865 |
ggtgtttgagggtatttgaagcaagcaacgtggaggcatcatttggcct-aaaccaacatatccttgtcacctatgggcaataaattcttcccacgaggc |
27390767 |
T |
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| Q |
119 |
atcaatgtgtcctgatctacactcttaatttttgagtaaggtacatac |
166 |
Q |
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| T |
27390766 |
atcaatgtgttctgatctacactcttaatttttgagtaagttacatac |
27390719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 27384130 - 27384020
Alignment:
| Q |
255 |
tattttaaattcttgtagtattccatacaaaagaaattattgtactcgtgctataatatcgtttttaaagagttgctagcgtgacgtagctcaatccata |
354 |
Q |
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| T |
27384130 |
tattataaattcttgtagtatcccatacaaaagaaattattgtacccgtgctataatatcgtttttaaagagttgctagcgtgacgtagctcaacccata |
27384031 |
T |
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| Q |
355 |
caaaaatagga |
365 |
Q |
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| T |
27384030 |
taaaaatagga |
27384020 |
T |
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