View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_14 (Length: 371)
Name: NF14742_low_14
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 46536817 - 46537010
Alignment:
| Q |
14 |
aaaatgtaaaagttaattgggtttactattactgcaattttaaggataaaattgatttacatttactaagaagtaagaacacaagttgcaagnnnnnnnn |
113 |
Q |
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| T |
46536817 |
aaaatgtaaaagttaattgggtttactattactgcaattttaaggataaaattgatttacatttactaagaagtaagaacacaagttgcaag----acac |
46536912 |
T |
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| Q |
114 |
nnnnnnnnnngagcctatgacaaataattctgaagtttagtagggtccatgtccctaaacctttgggtccattttctcagatactcaaacaagatatc |
211 |
Q |
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| T |
46536913 |
aacacacacagagcctatgacaaataattctgaagtttagtagggtccatgtccctaaacctttgggtccattttctcagatactcaaacaagatatc |
46537010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 46537075 - 46537154
Alignment:
| Q |
276 |
actcacaatttcacaacacacaggaaaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatac |
355 |
Q |
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| T |
46537075 |
actcacaatttcacaacacacaggaaaacatcacacacgcaacaatctgcaacatttcctgcagtaacatttaataatac |
46537154 |
T |
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