View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_16 (Length: 348)
Name: NF14742_low_16
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 9486457 - 9486137
Alignment:
| Q |
11 |
tagctcaaaattaagaagttcaaatcattctacttcagaatctcaagattatatgacataacttattttagcttatatgttataagattaatctcatgaa |
110 |
Q |
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| T |
9486457 |
tagctcaaattcaagaagttcaaatcattctacttcagaatatcaaaattatatgacatgacttattttagcttatatgttataagattaatctcatgaa |
9486358 |
T |
|
| Q |
111 |
aataactcatcagaatctgggatttctatctaaaggaactcaccagaatcacttttgtccacttttaatttagcttaagcttcaattaagctcttgtcag |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9486357 |
aataactcaccagaatctgggatttctatctaaaggaactcaccaaaatcacttttgtccacttttaatttagcttaagcttcaattaagctcttgtcag |
9486258 |
T |
|
| Q |
211 |
ctttataatcacttttccagaaacattttatttcggcttaattgcttatgctcctaacttttgcatttaaacttcaaaccaaactcttgttcagccattt |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9486257 |
ctttataatcactttttcagaaacattttatttcggcttaattgcttatgctcttaacttttgcatttaaacttcaaaccaaactcttgttcagccattt |
9486158 |
T |
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| Q |
311 |
aagcatacataaccagttatg |
331 |
Q |
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|||||| |||||||||||||| |
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| T |
9486157 |
aagcatgcataaccagttatg |
9486137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 20112292 - 20112406
Alignment:
| Q |
193 |
caattaagctcttgtcagctttataatcacttttc-cagaaacattttatttcggcttaattgcttatgctcctaacttttgcatttaaacttcaaacca |
291 |
Q |
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||||||||||| || ||||| |||||||||| || | ||||| ||||||||||||| |||||| |||| ||||||||||| ||| |||||||||||| |
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| T |
20112292 |
caattaagctcctgccagctccataatcacttctctccaaaacaacttatttcggcttatttgcttctgcttctaacttttgcctttcaacttcaaacca |
20112391 |
T |
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| Q |
292 |
aactcttgttcagcc |
306 |
Q |
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||||||| ||||||| |
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| T |
20112392 |
aactcttattcagcc |
20112406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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