View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_18 (Length: 319)
Name: NF14742_low_18
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 18761974 - 18761859
Alignment:
| Q |
1 |
gtgtatttgtaactatagtagttaaattgcttgtttcnnnnnnngttcaaaataaatataagaaataataaattttcttttatttcaatcctacttgtct |
100 |
Q |
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| T |
18761974 |
gtgtatttgtaactatagtagttaaattgcttgttt------aagttctaaataaatataagaaataataaattttcttttatttcaatcctacttgtct |
18761881 |
T |
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| Q |
101 |
tattgcattcaccattttaatt |
122 |
Q |
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| T |
18761880 |
tattgcattcaccattttaatt |
18761859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 18761740 - 18761644
Alignment:
| Q |
153 |
cgtgatacaaaacttgatttgtagaacgatatttagaatttgtttccaacaatcaaacacaaaataaacatagttgtactagacacacatgcctgatt |
250 |
Q |
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| T |
18761740 |
cgtgatacaaaacttgatttgtagaacgatatttagaatgt-ttgcaaacaatcaaacacaaaacaaacatagttgtactagacacacatgcctgatt |
18761644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 18758870 - 18758765
Alignment:
| Q |
45 |
gttcaaaataaatataagaaataa--taaattttcttttatttcaatcctacttgtcttattgcattcaccattttaattcattttttcgttcaaagtgt |
142 |
Q |
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|||| ||||||||||||||||||| ||||| | | |||||||| |||||||||| | |||| ||||| | ||||||||||| |||| |||||||||| |
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| T |
18758870 |
gttctaaataaatataagaaataaattaaatctattcttatttcagtcctacttgtgtgattgtattcatcgttttaattcataatttcattcaaagtgt |
18758771 |
T |
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| Q |
143 |
actcca |
148 |
Q |
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|||||| |
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| T |
18758770 |
actcca |
18758765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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