View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_21 (Length: 295)
Name: NF14742_low_21
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 281
Target Start/End: Original strand, 30336989 - 30337165
Alignment:
| Q |
106 |
actatcattgtaaagatcttggaacatatgattgtcatataacaagacactaaataacatacattcctaaaatt-agaaagnnnnnnnnnnctaaatagc |
204 |
Q |
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| T |
30336989 |
actaacattgtaaagatcttggaacatatgattgtcatataataagacactaaataacatacattcctaaaatttaaaaaaaaaaaaaaaaccaaatagc |
30337088 |
T |
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| Q |
205 |
atacattcatccatgatgataaaaagaaataaccaacaatcctctaaatttcaatatatctctttcttgttcattct |
281 |
Q |
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| T |
30337089 |
atacattcatctatgatgataaaaagaaataaccaacaatcctctaaatttcaatatatctctttcttgttcattct |
30337165 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 30336929 - 30337003
Alignment:
| Q |
13 |
aatatggtctgatatcacatgtaagtattagttttcaaattgacgtttacattttagaagactatcattgtaaag |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
30336929 |
aatatggtctgatatcacatgtaagtattagttttcaaattgacgtttacattttagaaaactaacattgtaaag |
30337003 |
T |
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