View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_22 (Length: 294)
Name: NF14742_low_22
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_22 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 1103934 - 1104212
Alignment:
| Q |
16 |
atgaagctcggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
115 |
Q |
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| T |
1103934 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
1104033 |
T |
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| Q |
116 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
215 |
Q |
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| T |
1104034 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
1104133 |
T |
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| Q |
216 |
gactgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaag |
294 |
Q |
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| T |
1104134 |
gactgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaag |
1104212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 1087378 - 1087659
Alignment:
| Q |
16 |
atgaagctcggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
115 |
Q |
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| T |
1087378 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaagttgggacgatccatcttcgggagatttaacttggggtattg |
1087477 |
T |
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| Q |
116 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
215 |
Q |
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| T |
1087478 |
tccttagtagtaatccagaagttgtattgaaaaaaggatcagttgagattcatagaactggcccttggaatggagttggatttagtggagcacctgtgga |
1087577 |
T |
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| Q |
216 |
gactgttactcaaattgtcgaa---acaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaag |
294 |
Q |
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| T |
1087578 |
gattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaag |
1087659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 1046904 - 1047185
Alignment:
| Q |
16 |
atgaagctcggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
115 |
Q |
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| T |
1046904 |
atgaagcttggatgggacctaaaaattggtcttaatcgtccattaacttcttggaaaaattgggacgatccatcttcgggagatttaacttggggtattg |
1047003 |
T |
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| Q |
116 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
215 |
Q |
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| T |
1047004 |
tccttcgtagtaatccagaaattgttttgaaaagaggatcagttgaaattcataggagtggtccttggaatggagttggatttagtggagcgcctatgga |
1047103 |
T |
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| Q |
216 |
gactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaag |
294 |
Q |
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| T |
1047104 |
gattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaag |
1047185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 1071717 - 1071910
Alignment:
| Q |
16 |
atgaagctcggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
115 |
Q |
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| T |
1071717 |
atgaagcatggatgggacttaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggacgatccatcatcgggagatttaacatggggtattg |
1071816 |
T |
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| Q |
116 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacc |
209 |
Q |
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| T |
1071817 |
tccttcatagtaatccagaaattgtattgaaaaaaggatcagttgaaattcacaggagtggtccttggaatggagttggatttagtggagcacc |
1071910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 1071950 - 1071998
Alignment:
| Q |
246 |
tgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaag |
294 |
Q |
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| T |
1071950 |
tgtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaag |
1071998 |
T |
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