View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14742_low_29 (Length: 238)

Name: NF14742_low_29
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14742_low_29
NF14742_low_29
[»] chr3 (2 HSPs)
chr3 (1-238)||(7052371-7052608)
chr3 (4-238)||(38938470-38938701)
[»] chr8 (1 HSPs)
chr8 (1-174)||(13378910-13379083)
[»] chr6 (12 HSPs)
chr6 (10-174)||(16658831-16658995)
chr6 (7-174)||(18872359-18872526)
chr6 (7-174)||(18586877-18587044)
chr6 (8-174)||(17070326-17070492)
chr6 (49-176)||(16790232-16790359)
chr6 (7-174)||(18793796-18793963)
chr6 (8-174)||(16797989-16798155)
chr6 (15-174)||(18869882-18870041)
chr6 (8-174)||(16988268-16988434)
chr6 (73-174)||(16839367-16839468)
chr6 (10-174)||(16867180-16867344)
chr6 (10-238)||(16781924-16782153)
[»] scaffold0230 (1 HSPs)
scaffold0230 (7-174)||(5498-5665)
[»] scaffold0511 (1 HSPs)
scaffold0511 (7-174)||(10178-10345)
[»] scaffold0144 (1 HSPs)
scaffold0144 (58-174)||(38357-38473)
[»] scaffold0133 (2 HSPs)
scaffold0133 (1-238)||(9317-9555)
scaffold0133 (1-238)||(13665-13903)
[»] scaffold0256 (1 HSPs)
scaffold0256 (1-174)||(9960-10133)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7052608 - 7052371
Alignment:
Q  1 cagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7052608 cagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacacccaa 7052509  T
Q  101 aaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccatttgcgggtatgtatgagaagaaatgaat 200  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7052508 aaaggatgcaagctcctctcgaaaaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccatttgcgggtatgtatgagaagaaatgaat 7052409  T
Q  201 cagagttttgaatggagatgactttgctctaggaagat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7052408 cagagttttgaatggagatgactttgctctaggaagat 7052371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 38938701 - 38938470
Alignment:
Q  4 catggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaa 103  Q
    |||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||| |    
T  38938701 catggcttgtaatttgcttctcttcagcatctttgaggacagcacgaattgcagtgagatttccacgtagcttctgggtcaactctccaacacccaaata 38938602  T
Q  104 ggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccatttgcgggtatgtatgagaaga-aatgaatca 202  Q
    || |||||||||||||| |||||| | ||||||| ||||||||| | || |||||||| | ||||||||||    | | ||||||||| | |||||||||    
T  38938601 ggttgcaagctcctctccaacaaatgttccgagggtttcaatcaggatttcaagtaaagcgtcagccattt---tgcaggtatgagaacagaatgaatca 38938505  T
Q  203 gagttttgaatggagatgactttgctctaggaagat 238  Q
      |||| || |||||||| |||||||||||||||||    
T  38938504 aggtttggattggagatg-ctttgctctaggaagat 38938470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 13378910 - 13379083
Alignment:
Q  1 cagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaa 100  Q
    ||||||| ||||| ||||||||| ||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  13378910 cagcatgacttgttatttgcttctcttcagcatctttgaggacagcccgaattgcagtgagatttccacatagcttctgggtcaattctccaacacccaa 13379009  T
Q  101 aaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    ||||| || |||||| | |  |||||||||||| ||||||| |||||| |||||||||||||||||||||||||    
T  13379010 aaaggttgaaagctcttgttgaacaaaagatccaaggttttgaatcacagttccaagtaaaacatcagccattt 13379083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 16658831 - 16658995
Alignment:
Q  10 ttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggatgc 109  Q
    |||| |||||||||  |||||| ||||| |||| ||||||||||||||||||||||||| ||||| | |||||||||||||| ||||| |||||||||||    
T  16658831 ttgttatttgcttcttttcagcatcttttagtacagcacgaattgcagtgagatttccagatagcctttgggtcaattctccaacacccaaaaaggatgc 16658930  T
Q  110 aagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    || |||||||| ||||||||||||||||||||| |||||| ||||||||||| | ||||||||||    
T  16658931 aatctcctctcgaacaaaagatccgaggttttctatcacgattccaagtaaagcttcagccattt 16658995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 18872526 - 18872359
Alignment:
Q  7 ggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaagga 106  Q
    ||||||| | ||||||| ||||||| |||| ||| | |||||||||||| |||||||||||||||||||| || ||||||||| | ||||| |||||||     
T  18872526 ggcttgttagttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatttccacatagcttttgtgtcaattcttcaacacccaaaaaggt 18872427  T
Q  107 tgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
     | ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  18872426 cgaaagctcctctcgaacaaaagatccgaggttttgaatcacagttccaagtaaaacatcagccattt 18872359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 18587044 - 18586877
Alignment:
Q  7 ggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaagga 106  Q
    ||||||| ||||||||| ||||||| |||| ||| | |||||||||||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||     
T  18587044 ggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggt 18586945  T
Q  107 tgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
     | ||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||| |||||    
T  18586944 cgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattt 18586877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 17070326 - 17070492
Alignment:
Q  8 gcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggat 107  Q
    |||||| || ||||||  |||||| ||||| |||| |||||| ||||  ||||| ||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  17070326 gcttgttatctgcttcttttcagcatcttttagtacagcacggattgtggtgaggttttcatttagcttctgggtcaattctccaacacccaaaaaggat 17070425  T
Q  108 gcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    |||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  17070426 gcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaagtaaagcttcagccattt 17070492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 16790232 - 16790359
Alignment:
Q  49 gaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcac 148  Q
    |||||||||||||||||||  ||||| | ||||||||||| || ||||| |||||||||||||||||||||  |||||||||||||||||||| ||| ||    
T  16790232 gaattgcagtgagatttccggatagcctttgggtcaattccccaacacccaaaaaggatgcaagctcctcttgaacaaaagatccgaggttttgaattac 16790331  T
Q  149 ggttccaagtaaaacatcagccatttgc 176  Q
    ||||| ||||||||||||||||||||||    
T  16790332 ggttctaagtaaaacatcagccatttgc 16790359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 18793963 - 18793796
Alignment:
Q  7 ggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaagga 106  Q
    ||||||| ||||||||| |||| || ||||  || | |||||||||||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||     
T  18793963 ggcttgttatttgcttctcttcggcatcttgaaggacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggt 18793864  T
Q  107 tgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
     | ||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||| |||||    
T  18793863 cgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattt 18793796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 16797989 - 16798155
Alignment:
Q  8 gcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggat 107  Q
    |||||| || ||||||  |||||| ||||| |||| |||||| ||||  ||||| ||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  16797989 gcttgttatctgcttcttttcagcatcttttagtacagcacggattgtggtgaggttttcatttagcttctgggtcaattctccaacacccaaaaaggat 16798088  T
Q  108 gcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||||| |||| | ||||||||||    
T  16798089 gcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaattaaagcgtcagccattt 16798155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 18870041 - 18869882
Alignment:
Q  15 atttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggatgcaagct 114  Q
    ||||||||| ||||||| |||| ||| | |||  ||||||| |||||||||||||||||||| || ||||||||| | ||||| |||||||  | |||||    
T  18870041 atttgcttctcttcagcatcttggaggacagcctgaattgcggtgagatttccacatagcttttgtgtcaattcttcaacacccaaaaaggtcgaaagct 18869942  T
Q  115 cctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    |||||| |||||| || |||||||||| |||||| |||||||||||||||||||||||||    
T  18869941 cctctcgaacaaacgacccgaggttttgaatcacagttccaagtaaaacatcagccattt 18869882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 16988268 - 16988434
Alignment:
Q  8 gcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggat 107  Q
    |||||| |||||||||  || ||| ||||| |||| |||||| ||||  ||||| ||| ||  ||| ||||||||||||| | | ||||| |||||||||    
T  16988268 gcttgttatttgcttcttttgagcatcttttagtacagcacggattgtggtgaggttttcatttagtttctgggtcaatttttcaacacccaaaaaggat 16988367  T
Q  108 gcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| | ||||||||||    
T  16988368 gcaagctcctctcgaacaaaatatccgaggttttcaatcacgattccaagtaaagcgtcagccattt 16988434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 16839367 - 16839468
Alignment:
Q  73 gcttctgggtcaattctcctacaccaaaaaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccat 172  Q
    |||| |||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |||| | ||||||||    
T  16839367 gcttatgggtcaattctccaacacccaaaaaggatgcaatctcctctcgaacaaaagatccgaggttttcaatcacgattccaattaaagcgtcagccat 16839466  T
Q  173 tt 174  Q
    ||    
T  16839467 tt 16839468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 16867344 - 16867180
Alignment:
Q  10 ttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggatgc 109  Q
    |||| |||||||||  |||||| ||||| |||| | |||| ||||  ||||| ||| ||  ||| ||||||||||||||||| ||||| |||||||||||    
T  16867344 ttgttatttgcttcttttcagcatcttttagtacatcacggattgtggtgaggttttcatttagtttctgggtcaattctccaacacccaaaaaggatgc 16867245  T
Q  110 aagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    || |||||||| |||||||||||| |||||||| |||||| ||||||  ||| | ||||||||||    
T  16867244 aatctcctctcgaacaaaagatccaaggttttctatcacgattccaatcaaagcttcagccattt 16867180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 16781924 - 16782153
Alignment:
Q  10 ttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggatgc 109  Q
    |||| |||||||||  |||||| ||||| || | |||||| |||  |||||| |||| | ||||  | |||||||||||||| ||||| ||| |||  ||    
T  16781924 ttgttatttgcttcttttcagcatcttttaggacagcacggattaaagtgagctttctagatagtctttgggtcaattctccaacacccaaataggtagc 16782023  T
Q  110 aagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccatttgcgggtatgtatgagaagaaatgaatcaga---gt 206  Q
    ||||||||||   ||||||||||||||||||| ||||||| | ||||||||| |||||||||||| | |  ||||  ||  |||||||||||| |   ||    
T  16782024 aagctcctcttgtacaaaagatccgaggttttgaatcacgataccaagtaaagcatcagccattttcag--atgtgagaacagaaatgaatcaaagttgt 16782121  T
Q  207 tttgaatggagatgactttgctctaggaagat 238  Q
    || || | ||||||||||||||||||||||||    
T  16782122 ttagattagagatgactttgctctaggaagat 16782153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 5498 - 5665
Alignment:
Q  7 ggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaagga 106  Q
    ||||||| ||||||||| ||||||| |||| ||| | |||||||||||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||     
T  5498 ggcttgttatttgcttctcttcagcatcttggaggacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggt 5597  T
Q  107 tgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
     | ||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||| |||||    
T  5598 cgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattt 5665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 10178 - 10345
Alignment:
Q  7 ggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaaaaagga 106  Q
    ||||||| ||||||||| |||| || ||||  || | |||||||||||| |||||||||||||||| ||| || ||||||||||| ||||| |||||||     
T  10178 ggcttgttatttgcttctcttcggcatcttgaaggacagcacgaattgcggtgagatttccacataacttttgtgtcaattctccaacacccaaaaaggt 10277  T
Q  107 tgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
     | ||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||| |||||    
T  10278 cgaaagctcctctcgaacaaaagatccgaggatttgaatcacagttccaagtaaaacatcagtcattt 10345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 38357 - 38473
Alignment:
Q  58 tgagatttccacatagcttctgggtcaattctcctacaccaaaaaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaag 157  Q
    |||| |||||||  ||||||| |||||||||||| ||||| ||||||||||||||||| |||| |||||||  |||||| |||||||||||| || ||||    
T  38357 tgagttttccacgcagcttctcggtcaattctccaacacccaaaaaggatgcaagctcatctcgaacaaaatgtccgagattttcaatcacgattgcaag 38456  T
Q  158 taaaacatcagccattt 174  Q
    |||| | || |||||||    
T  38457 taaagcgtcggccattt 38473  T

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Target: scaffold0133 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9317 - 9555
Alignment:
Q  1 cagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaa 100  Q
    |||||| | |||| |||||||||  |||||| ||||| || | |||||| |||  |||||| |||| | ||||  | |||||||||||||| ||||| ||    
T  9317 cagcatcgtttgttatttgcttcttttcagcatcttttaggacagcacggattaaagtgagctttctagataggctttgggtcaattctccaacacccaa 9416  T
Q  101 aaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccatttgcgggtatgtatgagaagaaatgaat 200  Q
    | |||  ||||||||||||   ||||| ||||||||||||| ||||| | ||||||||||| |||||||||||| | |  ||||  ||  ||||||||||    
T  9417 ataggtagcaagctcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccattttcag--atgtgagaacagaaatgaat 9514  T
Q  201 caga---gttttgaatggagatgactttgctctaggaagat 238  Q
    || |   |||| || ||||||||| ||||||||||||||||    
T  9515 caaagttgtttggattggagatgattttgctctaggaagat 9555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13665 - 13903
Alignment:
Q  1 cagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaa 100  Q
    |||||| | |||| |||||||||  ||| || ||||| || | |||||| |||  |||||| |||| | ||||  | |||||||||||||| ||||| ||    
T  13665 cagcatcgtttgttatttgcttcttttctgcatcttttaggacagcacggattaaagtgagctttctagataggctttgggtcaattctccaacacccaa 13764  T
Q  101 aaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccatttgcgggtatgtatgagaagaaatgaat 200  Q
    | |||  |||| |||||||   ||||| ||||||||||||| ||||| | ||||||||||| |||||||||||| | |  ||||  ||  ||||||||||    
T  13765 ataggtagcaaactcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccattttcag--atgtgagaacagaaatgaat 13862  T
Q  201 caga---gttttgaatggagatgactttgctctaggaagat 238  Q
    || |   |||| || ||||||||| ||||||||||||||||    
T  13863 caaagttgtttggattggagatgattttgctctaggaagat 13903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 9960 - 10133
Alignment:
Q  1 cagcatggcttgtaatttgcttcacttcagcgtctttgagtatagcacgaattgcagtgagatttccacatagcttctgggtcaattctcctacaccaaa 100  Q
    |||||| | |||| |||||||||  |||||| ||||| || | |||||| |||  |||||| |||| | ||||  | |||||||||||||| ||||| ||    
T  9960 cagcatcgtttgttatttgcttcttttcagcatcttttaggacagcacggattaaagtgagctttctagataggctttgggtcaattctccaacacccaa 10059  T
Q  101 aaaggatgcaagctcctctcaaacaaaagatccgaggttttcaatcacggttccaagtaaaacatcagccattt 174  Q
    | |||  |||| |||||||   ||||| ||||||||||||| ||||| | ||||||||||| ||||||||||||    
T  10060 ataggtagcaaactcctcttgtacaaatgatccgaggttttgaatcaagattccaagtaaagcatcagccattt 10133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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