View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_3 (Length: 519)
Name: NF14742_low_3
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_3 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 503
Target Start/End: Complemental strand, 3564 - 3076
Alignment:
| Q |
15 |
aatattaaaggttttacactatattgtgacaaagaaagagaagctgaggataaacgtttaacagaatctttgtcacgtttaacagaatcattttgaatac |
114 |
Q |
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| T |
3564 |
aatattaaaggttttacactatattgtgacaaagaaagagaagctgaggataaacgtttaacagaatctttgtcacatttaacagaatcattttgaatac |
3465 |
T |
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| Q |
115 |
attatgtatttacaattatcatatatttaatctttatatggttcaacttatttgattcattaacaaagttcaacaaattatttagttgtgacgtaaattt |
214 |
Q |
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| T |
3464 |
attatgtatttacaattatcatatatttaatctttatatggttcaacttatttgattcattaacaaagttcaacaaattatttagttgtgacgtaaattt |
3365 |
T |
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| Q |
215 |
tatcgtctcagtttatagagaaatcaaaaccaaaggttcattttgtgtaccaccaatttaaacagnnnnnnnnnnnnnnnnnnnttaggaacttgagtta |
314 |
Q |
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| T |
3364 |
tatcgtctcagtttatagagaaatcaaaaccaaaggttcattttgtgtaccaccaatttaaacagaaaaaagaaataaaaaaaattaggaacttgagtta |
3265 |
T |
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| Q |
315 |
tttcaatacattgattttaggagaggccaccacgagaaaaaataatgttacaaatcaaatttatagcatttttcgtttcggtccccaacgaaaatgaatg |
414 |
Q |
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| T |
3264 |
tttcaatacattgattttaggagaggccaccacgagaaaaaataatgttacaaatcaaatttatagtatttttcgtttcggtccccaacgaaaatgaatg |
3165 |
T |
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| Q |
415 |
cataaaaaattattactaaagaacattttattcaatttagattagattagatgtcacaaatgtgaacaattgattgtttaccaacattt |
503 |
Q |
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| T |
3164 |
cataaaaaattattactaaagaacattttattcaatttagattagattagatgtcacaaatgtgaacaattgattgtttaccaacattt |
3076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 21200824 - 21200877
Alignment:
| Q |
92 |
tttaacagaatcattttgaatacattatgtatttacaattatcatatatttaat |
145 |
Q |
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| T |
21200824 |
tttaagagaatcattttgaatacattatgtacttaccattatcatatatctaat |
21200877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 21146102 - 21146205
Alignment:
| Q |
346 |
acgagaaaaaataatgttacaaatcaaa------tttatagcatttttcgtttcggtccccaacgaaaatgaatgcataaaaaattattactaaagaaca |
439 |
Q |
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| T |
21146102 |
acgagaaaaaattatgttacatatcaaaaattaatttataacatttctcgttgcggttctcaaggaaaatcaatgcatcaaaaattattactaatgaaca |
21146201 |
T |
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| Q |
440 |
tttt |
443 |
Q |
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|||| |
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| T |
21146202 |
tttt |
21146205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 31106522 - 31106471
Alignment:
| Q |
87 |
tcacgtttaacagaatcattttgaatacattatgtatttacaattatcatat |
138 |
Q |
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| T |
31106522 |
tcacatttaacaaaatcattttaaatgcattatgtatttaccattatcatat |
31106471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 21181600 - 21181656
Alignment:
| Q |
84 |
ttgtcacgtttaacagaatcattttgaatacattatgtatttacaattatcatatat |
140 |
Q |
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| T |
21181600 |
ttgtcacatttaacataatcatttttaatacattaattgtttaccattatcatatat |
21181656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 21213786 - 21213834
Alignment:
| Q |
92 |
tttaacagaatcattttgaatacattatgtatttacaattatcatatat |
140 |
Q |
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| T |
21213786 |
tttaacagaatcattttgagtacattatgtacttgccattttcatatat |
21213834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 35094 - 35016
Alignment:
| Q |
372 |
aatttatagcatttttcgtttcggtccccaacgaaaatgaatgcataaaaaattattactaaagaacattttattcaatt |
451 |
Q |
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| T |
35094 |
aatttataacatttctcatttcggtctccatc-aaaatgaatgcatcaaaaattattactaatgaaaatttgaatcaatt |
35016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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