View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14742_low_32 (Length: 236)
Name: NF14742_low_32
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_32 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5454390 - 5454588
Alignment:
| Q |
1 |
ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5454390 |
ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaacttcagagttcatt |
5454489 |
T |
|
| Q |
101 |
gtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaatcttcttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5454490 |
gtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttttcataacttttggcttaccaatcttcttt |
5454588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5445807 - 5446006
Alignment:
| Q |
1 |
ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgtt-aaaaaagtaaaggaacacatcaatcaaagttcagagttcat |
99 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
5445807 |
ttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacacatcactcaaacttcagagttcat |
5445906 |
T |
|
| Q |
100 |
tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaatcttcttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5445907 |
tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaattataaatatttgagatttacttgtcataacttttggcttaccaagcttcttt |
5446006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5489579 - 5489752
Alignment:
| Q |
1 |
ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5489579 |
ttccagagaaataacttttttatataccctgaagtaacaatttaagtggttgaatgttaagaaagtaaaggaacacatcaatcaaacttcagagttcatt |
5489678 |
T |
|
| Q |
101 |
gtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcat |
174 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
5489679 |
gtaatttgtaactaattctgtttgcatcactatttgagtaagtatatcataaatatttgagatttacttgtcat |
5489752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 5502428 - 5502572
Alignment:
| Q |
1 |
ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||| ||||||| ||||||||| |||||| || |||||||||| |
|
|
| T |
5502428 |
ttccagagaaataacttttttatataccctgaagtaacagtttatgttgtttaatgttaagaaagtaacagaacacatctatcaaactttagagttcatt |
5502527 |
T |
|
| Q |
101 |
gtaagttgtaactaattctgtttgcagcactatttgagtaagtaa |
145 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5502528 |
gtaatttgtaactaattctgtttgcagcgctatttgagtaagtaa |
5502572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 5525284 - 5525382
Alignment:
| Q |
8 |
gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagt |
106 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||| || |||||||||| ||| | |||||||| ||||||||||||||||||| |
|
|
| T |
5525284 |
gaaataactttttaatataccctgaagtaacaatttaagtggtttaatgtcaacaaagtaaagggacaaagcaatcaaatttcagagttcattgtaagt |
5525382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 5484159 - 5484257
Alignment:
| Q |
8 |
gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagt |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||| | |||||||| | ||||||||||||||||| |
|
|
| T |
5484159 |
gaaataactttcttatataccctgaagtaataatttaagtggtttaatgtaaaaaaagtatagggacaaagcaatcaaactccagagttcattgtaagt |
5484257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 5849552 - 5849380
Alignment:
| Q |
8 |
gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagtt |
107 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| ||| || | ||||||||||||| |
|
|
| T |
5849552 |
gaaataacttttttatataacctgaagtaacaatttaagtggttcaatgttaacaaagtaaagtgacaaatcaacgaaactttgaaattcattgtaagtt |
5849453 |
T |
|
| Q |
108 |
gtaac---taattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataactttt |
181 |
Q |
| |
|
||||| ||| ||| || || |||||| ||| |||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
5849452 |
gtaacatttaactctactttgagtactatt----taattaaatcaaaaatatttgacatttaattatcataactttt |
5849380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 25810005 - 25809806
Alignment:
| Q |
1 |
ttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgtt-aaaaaagtaaaggaacacatcaatcaaagttcagagttcat |
99 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
25810005 |
ttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacacatcactcaaacttcagagttcat |
25809906 |
T |
|
| Q |
100 |
tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaatcttcttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25809905 |
tgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaattataaatatttgagatttacttgtcataacttttggcttaccaagcttcttt |
25809806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 26452354 - 26452318
Alignment:
| Q |
200 |
ggcttaatgcatacgcaggtcccttaacttatttttt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452354 |
ggcttaatgcatacgcaggtcccttaacttatttttt |
26452318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 26446499 - 26446536
Alignment:
| Q |
199 |
tggcttaatgcatacgcaggtcccttaacttatttttt |
236 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26446499 |
tggcttaatgcatacgcatgtcccttaacttatttttt |
26446536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 24750154 - 24750116
Alignment:
| Q |
198 |
ttggcttaatgcatacgcaggtcccttaacttatttttt |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24750154 |
ttggcttaatgcatacgcaagtcccttaacttatttttt |
24750116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 24744388 - 24744425
Alignment:
| Q |
199 |
tggcttaatgcatacgcaggtcccttaacttatttttt |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24744388 |
tggcttaatgcatacggaggtcccttaacttatttttt |
24744425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 21006135 - 21006171
Alignment:
| Q |
200 |
ggcttaatgcatacgcaggtcccttaacttatttttt |
236 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21006135 |
ggcttaatacatacgcaggtcccttaacttatttttt |
21006171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 21011929 - 21011893
Alignment:
| Q |
200 |
ggcttaatgcatacgcaggtcccttaacttatttttt |
236 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21011929 |
ggcttaatacatacgcaggtcccttaacttatttttt |
21011893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University