View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14742_low_34 (Length: 226)

Name: NF14742_low_34
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14742_low_34
NF14742_low_34
[»] chr1 (2 HSPs)
chr1 (2-219)||(11319565-11319792)
chr1 (2-219)||(11477586-11477813)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 11319792 - 11319565
Alignment:
Q  2 acaaattgacacatgctgataatgacacatgatttcaaaaaataaaagtaattgaatatgattgtgtatgttaatatgctgggtgttagatatcagca-- 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  11319792 acaaattgacacatgct-ataatgacacatgatttcaaaaaataaaagtaattgaatatgattgtgtatgttaatatgctgggtgttagatatcagcacg 11319694  T
Q  100 ---------ttacacacatcttcaatttgagattgaggtgtcttgatacatgactaaatatttgagatttgtttcatatatgtacaagagctaaattata 190  Q
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11319693 tataagatattacacacatcttcaatttgagattgaggtgtcttgatacatgactagatatttgagatttgtttcatatatgtacaagagctaaattata 11319594  T
Q  191 cattataagcatttgtacgttgttgtgta 219  Q
    ||||||||  |||||| ||||||||||||    
T  11319593 cattataaatatttgtgcgttgttgtgta 11319565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 11477813 - 11477586
Alignment:
Q  2 acaaattgacacatgctgataatgacacatgatttcaaaaaataaaagtaattgaatatgattgtgtatgttaatatgctgggtgttagatatcagca-- 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  11477813 acaaattgacacatgct-ataatgacacatgatttcaaaaaataaaagtaattgaatatgattgtgtatgttaatatgctgggtgttagatatcagcacg 11477715  T
Q  100 ---------ttacacacatcttcaatttgagattgaggtgtcttgatacatgactaaatatttgagatttgtttcatatatgtacaagagctaaattata 190  Q
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11477714 tataagatattacacacatcttcaatttgagattgaggtgtcttgatacatgactagatatttgagatttgtttcatatatgtacaagagctaaattata 11477615  T
Q  191 cattataagcatttgtacgttgttgtgta 219  Q
    ||||||||  |||||| ||||||||||||    
T  11477614 cattataaatatttgtgcgttgttgtgta 11477586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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