View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_4 (Length: 511)
Name: NF14742_low_4
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 44423887 - 44423558
Alignment:
| Q |
1 |
ccaaaggaataatggttggtaaagcttcgtattatgtcaaaaattccctccatctatatgaactatccttataattccatttagaaaagaaaatgacaat |
100 |
Q |
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| T |
44423887 |
ccaaaggaataatggttggtaaagctttgtattatgtcaaaaattccctccatctatatgaactatccttataattccatttagaaaagaaaatgacaat |
44423788 |
T |
|
| Q |
101 |
taattccttttcattattggtaagatagagatgcgagtgagactttgaatctattctattctgatgctgatttcttaaattagattttataactttagta |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44423787 |
taattccttttcattattggtaagatagagatgtgagtgagactttgaatctattctattctgatgctgatttcttaaattagattttattactttagta |
44423688 |
T |
|
| Q |
201 |
tggtaatggttgcgtgccattttaagggctcatagaaaggacaaaggaatttgggatacataataacatatacacaccttcctaagaatatttagttgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44423687 |
tggtaatggttgcgtgccattttaagggctcatagaaaggacaaaggaatttgggatacataataacatatacacaccttcctaagaatatttagttgtc |
44423588 |
T |
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| Q |
301 |
atttcactatattttcagcaagtacaatca |
330 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
44423587 |
atttcactatattttcagcaagtacaatca |
44423558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 372 - 480
Target Start/End: Complemental strand, 44423516 - 44423408
Alignment:
| Q |
372 |
ataaaatgataagaaaaatacagaaggaaattgtgttatacgcattctcgaagttatgttttaggtatggagtattatagtaagttcatgtttagtccct |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44423516 |
ataaaatgataagaaaaatacagaaggaaattgtgttatatgcattctcgaagttatgttttaggtatggagtattatagtaagttcatgtttagtccct |
44423417 |
T |
|
| Q |
472 |
acccaccag |
480 |
Q |
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||||||||| |
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| T |
44423416 |
acccaccag |
44423408 |
T |
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