View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_7 (Length: 430)
Name: NF14742_low_7
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 49438008 - 49437821
Alignment:
| Q |
228 |
gggctcgactattgatagaagactacatgtccagaaaaattgggaggacccaaaatttgttccgcaatgcctttcactacacctcaaaacttgcatattt |
327 |
Q |
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| T |
49438008 |
gggctcgactattgatagaagactacatgtccagaaaaattggaaggacccaaaatttgttccgcaatgcctttcactacacctcaaaacttgcatattt |
49437909 |
T |
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| Q |
328 |
cagaatttcataggccaacagggtgagcttatgtcaacaatatatattctgaagaatgcaagagttttgcaaacaatgtcaatctgtg |
415 |
Q |
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| T |
49437908 |
cagaatttcataggccaacagggtgagcttatgtcaacaatatatattctgaagaatgcaagagttttgcaaacaatgtcaatctgtg |
49437821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 49438211 - 49438075
Alignment:
| Q |
20 |
attcctacctttcataatctgaccaagttgaaacttcactctatcaactctaattggaatttgttggtgcaagtgctcaatcattgccctaagcttgaaa |
119 |
Q |
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| T |
49438211 |
attcctacctttcataatctgaccaagttgaaacttcactctatcaactctaattggaatttgttggtgcaagtgctcaatcattgccctaagcttgaaa |
49438112 |
T |
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| Q |
120 |
accttgagctagatgaggtttgttaagtttagggatc |
156 |
Q |
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| T |
49438111 |
accttgagctagatgaggtttgttaagtttagggatc |
49438075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 43359711 - 43359814
Alignment:
| Q |
49 |
gaaacttcactctatcaactctaattggaatttgttggtgcaagtgctcaatcattgccctaagcttgaaaaccttgagctagatgaggtttgttaagtt |
148 |
Q |
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| T |
43359711 |
gaaacttcactctatcaactataattggcgtttgttagtacaagtgctcaatccttgccctaaccttcaaaatgttgagcttagtcaggtttgttaagtt |
43359810 |
T |
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| Q |
149 |
tagg |
152 |
Q |
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|||| |
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| T |
43359811 |
tagg |
43359814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 49415715 - 49415840
Alignment:
| Q |
28 |
ctttcataatctgaccaagttgaaacttcactctatcaactctaattggaatttgttggtgcaagtgctcaatcattgccctaagcttgaaaaccttgag |
127 |
Q |
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| T |
49415715 |
ctttcataatttgaccaacttgggactttactctataaactctaattggcatttgttggcacaagtgctcaaccactgccccagccttcaaaatgttgag |
49415814 |
T |
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| Q |
128 |
ctagatgaggtttgttaagtttaggg |
153 |
Q |
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| T |
49415815 |
cttagtgaggtttgttaagtttaggg |
49415840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 401
Target Start/End: Complemental strand, 17641278 - 17641140
Alignment:
| Q |
263 |
aaaattgggaggacccaaaatttgttccgcaatgcctttcactacacctcaaaacttgcatatttcagaatttcataggccaacagggtgagcttatgtc |
362 |
Q |
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||||||||| |||||||| ||||||||||||||| ||||| ||||||| |||| ||||| | ||| || |||||||||||| | || |||||| | | |
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| T |
17641278 |
aaaattgggtggacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcgagcttctatt |
17641179 |
T |
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| Q |
363 |
aacaatatatattctgaagaatgcaagagttttgcaaac |
401 |
Q |
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||| | | |||||||||||||||| |||||||||||| |
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| T |
17641178 |
ggcaagaaacattctgaagaatgcaaaagttttgcaaac |
17641140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 49426826 - 49426758
Alignment:
| Q |
52 |
acttcactctatcaactctaattggaatttgttggtgcaagtgctcaatcattgccctaagcttgaaaa |
120 |
Q |
| |
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| T |
49426826 |
actttactctataaactctaactggcatttgttggcacaagtgctcaatcattgccctaaccttcaaaa |
49426758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 399
Target Start/End: Original strand, 43362355 - 43362389
Alignment:
| Q |
365 |
caatatatattctgaagaatgcaagagttttgcaa |
399 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
43362355 |
caatatatattgtgaagaatgcaagagttttgcaa |
43362389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 49445374 - 49445332
Alignment:
| Q |
369 |
atatattctgaagaatgcaagagttttgcaaacaatgtcaatc |
411 |
Q |
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||||||| ||||||||||||||||||||||||| ||| ||||| |
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| T |
49445374 |
atatattttgaagaatgcaagagttttgcaaaccatgacaatc |
49445332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 37419392 - 37419428
Alignment:
| Q |
267 |
ttgggaggacccaaaatttgttccgcaatgcctttca |
303 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |
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| T |
37419392 |
ttgggaggacccaaaaattgttccggaatgcctttca |
37419428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 401
Target Start/End: Original strand, 43359944 - 43360060
Alignment:
| Q |
285 |
tgttccgcaatgcctttcactacacctcaaaacttgcatatttcagaatttcataggccaacagggtgagcttatgtcaacaatatatattctgaagaat |
384 |
Q |
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|||||||| ||| ||||| ||||||| |||||||||| | || | | |||| ||||||||| |||||| || || | ||| ||| ||||| || ||| |
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| T |
43359944 |
tgttccgcggtgcatttcattacaccttaaaacttgcacactttggtacttcagaggccaacatggtgaggttcagttagcaacatacattcttaataat |
43360043 |
T |
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| Q |
385 |
gcaagagttttgcaaac |
401 |
Q |
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| T |
43360044 |
gcaagagttttgcaaac |
43360060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 401
Target Start/End: Original strand, 49415939 - 49416089
Alignment:
| Q |
254 |
atgtccagaaaaattgggaggacc---caaaatttgttccgcaatgcctttcactacacctcaaaacttgcatatttcagaatttcataggccaacaggg |
350 |
Q |
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||||||| ||||||||||||||| ||| ||||||||| ||| | |||||| |||| || |||||||||| | ||| ||| ||| ||||| || | || |
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| T |
49415939 |
atgtccatgaaaattgggaggaccacccaatatttgttccacaaagtctttcattacaacttaaaacttgcaaacttctgaacttcttaggcgaagaagg |
49416038 |
T |
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| Q |
351 |
tgagcttatgtcaacaatatatattctgaagaatgcaagagttttgcaaac |
401 |
Q |
| |
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|||||| | | ||| ||| ||| |||||||||| |||||||||||||| |
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| T |
49416039 |
cgagcttctattggcaagatacattttgaagaatgctagagttttgcaaac |
49416089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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