View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_8 (Length: 404)
Name: NF14742_low_8
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 390
Target Start/End: Original strand, 52167748 - 52168153
Alignment:
| Q |
4 |
actattttgggtcttgcagatttttgaagggataaattggtcttcaagttatatttaaatgagatagtaagatatgtatctataagacgaaacaggcaac |
103 |
Q |
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| T |
52167748 |
actattttgggtcttgcagatttttgaagggataaattggtcttcacgttatatttaaatgagatagtaagatatgtatctataagacgaaacaggcaac |
52167847 |
T |
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| Q |
104 |
tagccatgacaatcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctt |
203 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52167848 |
tagccatgacaatcataccacataatttacatatttaacgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctt |
52167947 |
T |
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| Q |
204 |
tattc------------------ttgtttttatgattaggaccaaaaaggaatgtaatagaccatatattattaaattatatgatcctc---aaataata |
282 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
52167948 |
tattcttgttttaatagtcacaattgtttttatgattaggaccaaaaaggaatgtaatagaccata---tattaaattatatgatcatctaataataata |
52168044 |
T |
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| Q |
283 |
tctcagactagaaatgaatga-ttttgcttttataatctgagtaattgcgatggatttcacctatcactcattggtgcacgcctgtattccacatgattt |
381 |
Q |
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| T |
52168045 |
tctcagactagaaatgaatgatttttgcttttataatctgagtaattgcgatggatttcccctatcactcattggtggacgcctgtattccacatgattt |
52168144 |
T |
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| Q |
382 |
gacaatttt |
390 |
Q |
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| T |
52168145 |
gacaatttt |
52168153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 19327593 - 19327719
Alignment:
| Q |
87 |
aagacgaaacaggcaactagccatgacaatcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataat |
186 |
Q |
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||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
19327593 |
aagacgaaacatgcaactagccatgacagtcatagcacatgatttacatatttaatgtcgttcaggccacaaatccataatgatttaacataatcata-- |
19327690 |
T |
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| Q |
187 |
atatttaatacgctctttattcttgtttt |
215 |
Q |
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| T |
19327691 |
atatttaatacggtatttattgttgtttt |
19327719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 217 - 387
Target Start/End: Original strand, 19328220 - 19328386
Alignment:
| Q |
217 |
atgattaggaccaaaaaggaatgtaatagaccatatattattaaattatatgatcctcaaataatatctcagactagaaatgaatgattttgcttttata |
316 |
Q |
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||||||| | |||||||||| ||||||| |||||||||| ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
19328220 |
atgattaaggccaaaaaggagtgtaatataccatatatt---aaattatataatcctctaataatatctcagaccagaaagaaatgattttgcttttatc |
19328316 |
T |
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| Q |
317 |
atctgagtaattgcgatggatttcacctatcactcattggtgcacgcctgtattccacatgatttgacaat |
387 |
Q |
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| T |
19328317 |
attcgagtaattgcgatggattccccctatcactcattggtacacg-ctctattgcacatgatttgacaat |
19328386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 332
Target Start/End: Original strand, 19328047 - 19328137
Alignment:
| Q |
239 |
gtaatagaccatatattattaaattatatgatcctcaaataatatctcagactagaaatgaatgattttgcttttataatctgagtaattgcga |
332 |
Q |
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|||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
19328047 |
gtaatagaccatatatta---aattaaatgatcctctaataatatctcagaccagaaaggaatgattttgcttttatcatctaagtaattgcga |
19328137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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