View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14742_low_9 (Length: 402)
Name: NF14742_low_9
Description: NF14742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14742_low_9 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 16572762 - 16572964
Alignment:
| Q |
5 |
atgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16572762 |
atgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccat |
16572861 |
T |
|
| Q |
105 |
ccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcct |
204 |
Q |
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|||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16572862 |
ccttgctaagagtaatgaaagagctacagaagtatgattaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcct |
16572961 |
T |
|
| Q |
205 |
att |
207 |
Q |
| |
|
||| |
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|
| T |
16572962 |
att |
16572964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 16874640 - 16874845
Alignment:
| Q |
1 |
catcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16874640 |
catcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgttcgaattgactgagaaattat |
16874739 |
T |
|
| Q |
101 |
ccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
16874740 |
ccatccttgctaagagtaatgaaagagctacagaagcatggttaggaagtgtcggttggattgcactgccgctcctacaggtggcaggcgtgaagac-tg |
16874838 |
T |
|
| Q |
201 |
tcctatt |
207 |
Q |
| |
|
||||||| |
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| T |
16874839 |
tcctatt |
16874845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 16580779 - 16580980
Alignment:
| Q |
1 |
catcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16580779 |
catcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaaattat |
16580878 |
T |
|
| Q |
101 |
ccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatg |
200 |
Q |
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|||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
16580879 |
ccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcagatggtaggcgtgaagacatg |
16580978 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
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|
| T |
16580979 |
tc |
16580980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 16614601 - 16614400
Alignment:
| Q |
1 |
catcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16614601 |
catcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaaattat |
16614502 |
T |
|
| Q |
101 |
ccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatg |
200 |
Q |
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|||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
16614501 |
ccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcagatggtaggcgtgaagacatg |
16614402 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
|
|
| T |
16614401 |
tc |
16614400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 16875234 - 16875391
Alignment:
| Q |
224 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagttacttataattatacagtgtcacacaagttc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
16875234 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgctt---attatacagtgtcacacaagttt |
16875330 |
T |
|
| Q |
324 |
accgc-taagatgttgatcaacaatagtagagctctcattctgtctttctactaagttgat |
383 |
Q |
| |
|
||| | ||||| |||||||| ||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
16875331 |
accacttaagagattgatcaataataggagagctctcattctgtatttctactaagttgat |
16875391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 16581385 - 16581450
Alignment:
| Q |
224 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16581385 |
tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
16581450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 16613995 - 16613930
Alignment:
| Q |
224 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16613995 |
tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
16613930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 16976983 - 16976916
Alignment:
| Q |
225 |
agttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagtta |
294 |
Q |
| |
|
|||||| |||||||||| ||||||||||| | ||||||||| |||||||||| | | |||||||||||| |
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|
| T |
16976983 |
agttcaccattatataagagttcaacattga--tctacgtttcaattaaactcaagcaataaacaagtta |
16976916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 233422 - 233279
Alignment:
| Q |
3 |
tcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatcc |
102 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
233422 |
tcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaattatct |
233323 |
T |
|
| Q |
103 |
atccttgcaaagagtaatgaaagagctacagaaggatggttagg |
146 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
233322 |
atccttgcagagagtaatgaaagagctacagaagcaaggttagg |
233279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 21629538 - 21629732
Alignment:
| Q |
13 |
tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaa |
112 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| |||||||||||||||||| | ||| |||| |||||||||| |
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|
| T |
21629538 |
tgggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaagggtgcaggccttggcgttcgagttgactaataaa-tatctatccttgcaa |
21629636 |
T |
|
| Q |
113 |
agagtaatgaaagagctacagaaggatggttaggaagtg-tcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctatt |
207 |
Q |
| |
|
|||||||||||||||||||| ||| | ||| ||| || || |||||||| || | ||||| |||||||||||| || | ||||||||||||||| |
|
|
| T |
21629637 |
agagtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcaggtggcatgcatcaagacatgtcctatt |
21629732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 7392073 - 7392216
Alignment:
| Q |
3 |
tcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatcc |
102 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
7392073 |
tcatgcaagctgggatcaaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaattatct |
7392172 |
T |
|
| Q |
103 |
atccttgcaaagagtaatgaaagagctacagaaggatggttagg |
146 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
7392173 |
atccttgcagagagtaatgaaagagctacagaagcaaggttagg |
7392216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 48298538 - 48298405
Alignment:
| Q |
3 |
tcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatcc |
102 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
48298538 |
tcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaattatct |
48298439 |
T |
|
| Q |
103 |
atccttgcaaagagtaatgaaagagctacagaag |
136 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |
|
|
| T |
48298438 |
atccttgcagagagtaatgaaagagcttcagaag |
48298405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 10939 - 10841
Alignment:
| Q |
13 |
tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgca |
111 |
Q |
| |
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||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
10939 |
tgggaccaaccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgca |
10841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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