View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14743_low_1 (Length: 455)

Name: NF14743_low_1
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14743_low_1
NF14743_low_1
[»] chr3 (3 HSPs)
chr3 (1-411)||(1046079-1046485)
chr3 (68-163)||(1071133-1071228)
chr3 (68-163)||(1086797-1086892)
[»] chr2 (1 HSPs)
chr2 (357-452)||(27265173-27265268)
[»] chr8 (3 HSPs)
chr8 (361-443)||(43321563-43321645)
chr8 (366-439)||(7123763-7123836)
chr8 (365-439)||(24602247-24602321)
[»] chr4 (1 HSPs)
chr4 (361-439)||(51263020-51263098)
[»] chr1 (1 HSPs)
chr1 (361-443)||(48950460-48950542)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 1046485 - 1046079
Alignment:
Q  1 tgggtgctagtatcaattgcggtaaatattttcaagaagaacacgagattcagcttaacataccgtctcatagaaaaaatattggtcattttgccttgat 100  Q
    |||||| | ||||||||||||||| ||| ||| || ||||||| |||||| ||  ||||| ||  | ||||||||| ||||||||||||||||| |||||    
T  1046485 tgggtgattgtatcaattgcggtagataatttaaaaaagaacaagagattaagaataacaaacaatatcatagaaagaatattggtcattttgcattgat 1046386  T
Q  101 tgcaatttatgcagacacacgttatatgtttgtgcgtttatatatgctaaattgacttcccttnnnnnnnnnnnnnnncatgttaaattgacttgggact 200  Q
    || | || |||||||||||||||  ||||||||| ||||| ||||||||||||||| ||||||               ||||||||||||||||||||||    
T  1046385 tgaatttgatgcagacacacgttggatgtttgtgtgtttagatatgctaaattgacatcccttaaaaaagaaaaaaaacatgttaaattgacttgggact 1046286  T
Q  201 aaactatgtgtttgtatgttattaattagtctttgacccgtgcaacgcaccgggcaaaagagttttattatggtcatgacaaagtttactctcaacatat 300  Q
    ||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1046285 aaactatgtgtttgtatgttatta----gtctttgacccgtgcaatgcaccgggcaaaagagttttattatggtgatgacaaagtttactctcaacatat 1046190  T
Q  301 caaaaaatacaacatatattatgcaattcatagataaataaaagggttaacgtgttattatggaggatagagaagctggtaattggagattaacgtgtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1046189 caaaaaatacaacatatattatgcaattcatagataaataaaagggttaacgtgttattatggaggatagagaagctggtaattggagattaacgtgtta 1046090  T
Q  401 ttatggctttg 411  Q
    |||||||||||    
T  1046089 ttatggctttg 1046079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 1071228 - 1071133
Alignment:
Q  68 tcatagaaaaaatattggtcattttgccttgattgcaatttatgcagacacacgttatatgtttgtgcgtttatatatgctaaattgacttccctt 163  Q
    |||||| || |||||||| |||||||| |||| || | || |||||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  1071228 tcataggaagaatattggccattttgcattgaatgaatttgatgcagacacacattgtatgtttgtgcgtttatatatgctaaattgactttcctt 1071133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 1086892 - 1086797
Alignment:
Q  68 tcatagaaaaaatattggtcattttgccttgattgcaatttatgcagacacacgttatatgtttgtgcgtttatatatgctaaattgacttccctt 163  Q
    |||||| || ||||||||||||||||| |||||||   || | |||||||||| || |||||||||||||||||||||||||||||||||| ||||    
T  1086892 tcataggaagaatattggtcattttgcattgattgagtttgaggcagacacacattttatgtttgtgcgtttatatatgctaaattgactttcctt 1086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 452
Target Start/End: Original strand, 27265173 - 27265268
Alignment:
Q  357 attatggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttgggatattcttcga 452  Q
    ||||||||||||||||||||| || ||| ||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||| | ||||||    
T  27265173 attatggaggatagagaagctagtgattagagattaacttgttattatggttttgctgaacgtgcacgtcatcgtgatgcttgggatttacttcga 27265268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 43321645 - 43321563
Alignment:
Q  361 tggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttgggat 443  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||||||    
T  43321645 tggaggatagagaagctggtgactggagattaacttgttattatggctttcctgaacgtgcccgtcgtcgtgatgcttgggat 43321563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 7123763 - 7123836
Alignment:
Q  366 gatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttg 439  Q
    |||| |||||||||| |||||||||| || |||||||||||||||  ||||||||| |||||||||||||||||    
T  7123763 gataaagaagctggtgattggagattgacttgttattatggctttcctgaacgtgctcgtcgtcgtgatgcttg 7123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 24602247 - 24602321
Alignment:
Q  365 ggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttg 439  Q
    ||||||||| ||| || ||||||||||||| | |||||||||||||  |||||||||  ||| ||| ||||||||    
T  24602247 ggatagagacgctcgtgattggagattaactttttattatggctttcctgaacgtgcctgtcatcgcgatgcttg 24602321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 439
Target Start/End: Complemental strand, 51263098 - 51263020
Alignment:
Q  361 tggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttg 439  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||||  ||||||||  |||||| ||||||||||    
T  51263098 tggaggataaagaagctggtgattggagattaacttgttattatggctttcttgaacgtgttcgtcgttgtgatgcttg 51263020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 48950542 - 48950460
Alignment:
Q  361 tggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttgggat 443  Q
    ||||||||| |||||||||| ||||||||||||| | ||||||| |||||  ||||||||| ||| |||||||||||||||||    
T  48950542 tggaggataaagaagctggtgattggagattaacttattattatcgctttcctgaacgtgctcgtagtcgtgatgcttgggat 48950460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University