View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14743_low_11 (Length: 245)
Name: NF14743_low_11
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14743_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13628030 - 13628245
Alignment:
| Q |
1 |
tcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaatgagaatggcaatgctaatgaacccaacaagaagtggaaatttcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13628030 |
tcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaatgagaatggtaatgctaatgaacccaacaagaagtggaaatttcctt |
13628129 |
T |
|
| Q |
101 |
tcttagttttcttcaatgatgcaaggtataattattagatacataaaatatttttagcctttattcttgtagtagaagcatattatatactagaccatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13628130 |
tcttagttttcttcaatgatgcaaggtataattattagatacataaaataattttagcctttattcttgtagtagaagcatattatatactagaccatcc |
13628229 |
T |
|
| Q |
201 |
agccgtgctcgcacag |
216 |
Q |
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|||||||||||||||| |
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| T |
13628230 |
agccgtgctcgcacag |
13628245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13728444 - 13728659
Alignment:
| Q |
1 |
tcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaatgagaatggcaatgctaatgaacccaacaagaagtggaaatttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13728444 |
tcttgcaccatcaagtctttaagaatcattctcctttgtggatctactatgaatgagaatggtaatgctaatgaacccaacaagaagtggaaatttcctt |
13728543 |
T |
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| Q |
101 |
tcttagttttcttcaatgatgcaaggtataattattagatacataaaatatttttagcctttattcttgtagtagaagcatattatatactagaccatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13728544 |
tcttagttttcttcaatgatgcaaggtataattattagatacataaaataattttagcctttattcttgtagtagaagcatattatatactagaccatcc |
13728643 |
T |
|
| Q |
201 |
agccgtgctcgcacag |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
13728644 |
agccgtgctcgcacag |
13728659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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