View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14743_low_2 (Length: 447)

Name: NF14743_low_2
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14743_low_2
NF14743_low_2
[»] chr4 (20 HSPs)
chr4 (1-352)||(2711598-2711952)
chr4 (351-445)||(33268218-33268311)
chr4 (391-433)||(21464055-21464097)
chr4 (391-433)||(25439074-25439116)
chr4 (391-433)||(30607141-30607183)
chr4 (391-433)||(34423168-34423210)
chr4 (391-433)||(40314282-40314324)
chr4 (391-433)||(40324358-40324400)
chr4 (391-445)||(46080479-46080533)
chr4 (391-433)||(48181891-48181933)
chr4 (350-433)||(10671452-10671535)
chr4 (350-433)||(10885092-10885175)
chr4 (348-433)||(468237-468323)
chr4 (391-433)||(2712039-2712081)
chr4 (391-433)||(23019067-23019109)
chr4 (391-432)||(21075222-21075263)
chr4 (391-433)||(46577031-46577073)
chr4 (391-433)||(21020100-21020142)
chr4 (391-433)||(42251437-42251479)
chr4 (405-433)||(48508369-48508397)
[»] scaffold0862 (1 HSPs)
scaffold0862 (391-445)||(2087-2141)
[»] scaffold0013 (1 HSPs)
scaffold0013 (391-445)||(99679-99733)
[»] chr7 (19 HSPs)
chr7 (391-445)||(11847037-11847091)
chr7 (391-445)||(35359226-35359280)
chr7 (348-445)||(37747361-37747459)
chr7 (391-433)||(7469193-7469235)
chr7 (391-433)||(27251068-27251110)
chr7 (391-433)||(28241766-28241808)
chr7 (348-433)||(48989300-48989385)
chr7 (391-433)||(21521472-21521514)
chr7 (391-433)||(23152065-23152107)
chr7 (391-433)||(39050590-39050632)
chr7 (391-433)||(44523475-44523517)
chr7 (393-433)||(11652428-11652468)
chr7 (348-433)||(15993720-15993806)
chr7 (348-445)||(32040974-32041072)
chr7 (391-433)||(44378651-44378693)
chr7 (391-433)||(44387518-44387560)
chr7 (392-431)||(6907212-6907251)
chr7 (391-433)||(36710392-36710434)
chr7 (391-431)||(30467496-30467536)
[»] chr5 (12 HSPs)
chr5 (391-445)||(15839239-15839293)
chr5 (391-433)||(7122456-7122498)
chr5 (391-433)||(21716825-21716867)
chr5 (391-433)||(21796561-21796603)
chr5 (391-433)||(42536206-42536248)
chr5 (391-433)||(3370195-3370237)
chr5 (391-433)||(3859825-3859867)
chr5 (391-433)||(31795885-31795927)
chr5 (391-433)||(40728222-40728264)
chr5 (393-441)||(7006291-7006339)
chr5 (391-433)||(25642678-25642720)
chr5 (398-433)||(30668869-30668904)
[»] chr3 (8 HSPs)
chr3 (348-445)||(23495680-23495777)
chr3 (348-445)||(26167162-26167259)
chr3 (348-433)||(28038806-28038892)
chr3 (391-433)||(24171736-24171778)
chr3 (391-433)||(38601403-38601445)
chr3 (391-431)||(29860696-29860736)
chr3 (348-432)||(5118752-5118836)
chr3 (348-381)||(23494371-23494404)
[»] chr1 (14 HSPs)
chr1 (391-445)||(36631034-36631088)
chr1 (392-445)||(10375400-10375453)
chr1 (391-433)||(16831002-16831044)
chr1 (391-433)||(27361451-27361493)
chr1 (391-433)||(46624671-46624713)
chr1 (391-433)||(48643288-48643330)
chr1 (391-433)||(49763650-49763692)
chr1 (391-445)||(50961421-50961475)
chr1 (392-433)||(22058766-22058807)
chr1 (391-433)||(7377421-7377463)
chr1 (391-433)||(20160368-20160410)
chr1 (391-445)||(27904215-27904269)
chr1 (391-431)||(38174128-38174168)
chr1 (392-433)||(21813785-21813826)
[»] scaffold0087 (1 HSPs)
scaffold0087 (391-445)||(42157-42211)
[»] chr8 (11 HSPs)
chr8 (391-445)||(3777192-3777246)
chr8 (391-433)||(38983229-38983271)
chr8 (391-433)||(39014326-39014368)
chr8 (391-433)||(44057208-44057250)
chr8 (348-433)||(43323811-43323897)
chr8 (391-433)||(9555908-9555950)
chr8 (391-429)||(26170347-26170385)
chr8 (391-433)||(37483334-37483376)
chr8 (391-433)||(43827170-43827212)
chr8 (393-446)||(33284444-33284497)
chr8 (391-433)||(20165811-20165853)
[»] chr6 (13 HSPs)
chr6 (391-433)||(2403739-2403781)
chr6 (348-433)||(17183341-17183426)
chr6 (345-433)||(19635803-19635895)
chr6 (391-433)||(34491221-34491263)
chr6 (392-433)||(18867200-18867241)
chr6 (392-433)||(28744828-28744869)
chr6 (391-432)||(29056834-29056875)
chr6 (391-433)||(28562841-28562883)
chr6 (393-433)||(3587647-3587687)
chr6 (391-431)||(18586281-18586321)
chr6 (407-445)||(17141135-17141173)
chr6 (348-381)||(19634524-19634557)
chr6 (348-381)||(29057491-29057524)
[»] chr2 (7 HSPs)
chr2 (391-433)||(5203732-5203774)
chr2 (391-433)||(15249489-15249531)
chr2 (391-432)||(18748750-18748791)
chr2 (391-433)||(43235952-43235994)
chr2 (391-445)||(18860221-18860275)
chr2 (392-432)||(42744058-42744098)
chr2 (392-445)||(9891721-9891774)
[»] scaffold0012 (1 HSPs)
scaffold0012 (391-433)||(54457-54499)
[»] scaffold0230 (1 HSPs)
scaffold0230 (391-431)||(6221-6261)
[»] scaffold0265 (1 HSPs)
scaffold0265 (392-433)||(18983-19024)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 2711598 - 2711952
Alignment:
Q  1 acaattttgttattttgtggaatttaataatttctttgaacttcgtgttttaaacttgctaaacttgttgtgaata--cgctgcagagattaaaatgaag 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||    
T  2711598 acaattttgttattttgtggaatttaataatttctttgaacttcgtgttttaaacttgctaaacttgctgtgaatatacgctgcagaaattaaaatgaag 2711697  T
Q  99 caaaacatctgcgtgtacgatgatagatcaaagatttttatgggaaaaattcaaattaaaatgaaatagaattatttattgcacagatttggaaaagcta 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711698 caaaacatctgcgtgtatgatgatagatcaaagatttttatgggaaaaattcaaattaaaatgaaatagaattatttattgcacagatttggaaaagcta 2711797  T
Q  199 aatttacactttgtcattaaaaattaactaaccaatacaaattgagtatgatagaagttttgagactaaccacgagaaaataaacagcttctacatgaaa 298  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  2711798 aatttacactttgtcattcaaaattaactaaccaatacaaattgagtatgatagaagtttttggactaaccacgagaaaataaacagcttctacatgaaa 2711897  T
Q  299 tttgttccaaagaaagaaaacaaagttgca-aaacatgttaacttcacctctgta 352  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  2711898 tttgttccaaagaaagaaaacaaagttgcagaaacatgttaacttcaccactgta 2711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 33268218 - 33268311
Alignment:
Q  351 taatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  33268218 taatttaggcgagtttcggtttacc-cctgtaaaaaaaaagtttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 33268311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 21464097 - 21464055
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21464097 gtttagattccaaccctgtaaaataagattctttgattttagc 21464055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 25439116 - 25439074
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25439116 gtttagattccaaccctgtaaaataagattctttgattttagc 25439074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 30607183 - 30607141
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30607183 gtttagattccaaccctgtaaaataagattctttgattttagc 30607141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 34423210 - 34423168
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34423210 gtttagattccaaccctgtaaaataagattctttgattttagc 34423168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 40314282 - 40314324
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40314282 gtttagattccaaccctgtaaaataagattctttgattttagc 40314324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 40324358 - 40324400
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40324358 gtttagattccaaccctgtaaaataagattctttgattttagc 40324400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 46080533 - 46080479
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  46080533 gtttagattccaaccctctaaaataagattctttgattttagcccctgacctatg 46080479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 48181891 - 48181933
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48181891 gtttagattccaaccctgtaaaataagattctttgattttagc 48181933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 433
Target Start/End: Complemental strand, 10671535 - 10671452
Alignment:
Q  350 gtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||| ||||||||||||||| || |||||         ||||||||| |||||||||||||||||||||||||||||||||    
T  10671535 gtaatttgggcgagtttcggtttcccccctgtaaaaaaaaagtttagatttcaaccctgtaaaataagattctttgattttagc 10671452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 433
Target Start/End: Complemental strand, 10885175 - 10885092
Alignment:
Q  350 gtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||| ||||||||||||||| || |||||         ||||||||| |||||||||||||||||||||||||||||||||    
T  10885175 gtaatttgggcgagtttcggtttcccccctgtaaaaaaaaagtttagatttcaaccctgtaaaataagattctttgattttagc 10885092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 468237 - 468323
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcc-tgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||| ||||||||| || |||         |||||||||||||||||| ||||||||||||||||||||||||    
T  468237 ctgtaatttaggcgagttccggtttacccccctgtaaaaaaaaagtttagattccaaccctgaaaaataagattctttgattttagc 468323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 2712039 - 2712081
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  2712039 gtttcgattccaaccctgtaaaataagattctttgattttagc 2712081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 23019067 - 23019109
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  23019067 gtttagattccaaccctgtaaaataagattatttgattttagc 23019109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 21075222 - 21075263
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttag 432  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  21075222 gtttagattccaaccttgtaaaataagattctttgattttag 21075263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 46577073 - 46577031
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  46577073 gtttagattccaaccctgtaacataagattctttggttttagc 46577031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 21020100 - 21020142
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||  ||||||||||||||||||||||||| |||||||    
T  21020100 gtttagatgacaaccctgtaaaataagattctttggttttagc 21020142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 42251479 - 42251437
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||| | |||||||||||||||||| ||||||||    
T  42251479 gtttagattccaatcttgtaaaataagattctttcattttagc 42251437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 433
Target Start/End: Original strand, 48508369 - 48508397
Alignment:
Q  405 cctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||    
T  48508369 cctgtaaaataagattctttgattttagc 48508397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 2141 - 2087
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2141 gtttagattccaaccctgtaaaataagattctttgattttagcccttgacctatg 2087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 99679 - 99733
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  99679 gtttagattccaaccctgtaaaataagattctttgattttagcccttgacctatg 99733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 11847091 - 11847037
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  11847091 gtttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 11847037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 35359280 - 35359226
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  35359280 gtttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 35359226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 37747459 - 37747361
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcct-gtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||||||||||||| ||||||||||||  ||         |||||||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  37747459 ctgtaatttaggcgagttccggtttacctcccagtaaaaaaaaagtttagattccaaccctgtaaaataagattatttgattttagcccctgacctatg 37747361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 7469235 - 7469193
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7469235 gtttagattccaaccctgtaaaataagattctttgattttagc 7469193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 27251110 - 27251068
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27251110 gtttagattccaaccctgtaaaataagattctttgattttagc 27251068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 28241808 - 28241766
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28241808 gtttagattccaaccctgtaaaataagattctttgattttagc 28241766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 48989300 - 48989385
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| ||||| |||||||||||| |||||         |||||||||||||||||||||||||||||| ||||||||||||    
T  48989300 ctgtaatttgggcgactttcggtttaccccctgtaaaaaaaaagtttagattccaaccctgtaaaataagattttttgattttagc 48989385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 21521514 - 21521472
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  21521514 gtttagattccaatcctgtaaaataagattctttgattttagc 21521472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 23152107 - 23152065
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  23152107 gtttagattacaaccctgtaaaataagattctttgattttagc 23152065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 39050632 - 39050590
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  39050632 gtttagattccaatcctgtaaaataagattctttgattttagc 39050590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 44523517 - 44523475
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  44523517 gtttagattccaaccctgtaaaataagattctttaattttagc 44523475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 11652468 - 11652428
Alignment:
Q  393 ttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  11652468 ttagattccaaccctgtaaaataagattatttgattttagc 11652428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 433
Target Start/End: Complemental strand, 15993806 - 15993720
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnn-gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||| ||||||||| |||||          |||||||||||||||||||||||||  ||||||||||||||||    
T  15993806 ctgtaatttaggcgagttccggtttaccccctgtaaaaaaaaatgtttagattccaaccctgtaaaatacaattctttgattttagc 15993720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 445
Target Start/End: Original strand, 32040974 - 32041072
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnn-gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||||||||||||| ||||||||| |||||          |||||||||| ||  |||||||||||||||||||||||||||| | |||||||||    
T  32040974 ctgtaatttaggcgagttccggtttaccccctgtaaaaaaaaaagtttagattcaaattctgtaaaataagattctttgattttagcccctgacctatg 32041072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 44378693 - 44378651
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  44378693 gtttagattccaaccccgtaacataagattctttgattttagc 44378651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 44387560 - 44387518
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  44387560 gtttagattccaaccccgtaacataagattctttgattttagc 44387518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Complemental strand, 6907251 - 6907212
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgatttta 431  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  6907251 tttaaattccaaccctataaaataagattctttgatttta 6907212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 36710434 - 36710392
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||    
T  36710434 gtttagatttcaaccctgtcaaataagattatttgattttagc 36710392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 30467536 - 30467496
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgatttta 431  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  30467536 gtttagattacaaccttataaaataagattctttgatttta 30467496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 15839293 - 15839239
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  15839293 gtttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 15839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 7122498 - 7122456
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7122498 gtttagattccaaccctgtaaaataagattctttgattttagc 7122456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 21716867 - 21716825
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21716867 gtttagattccaaccctgtaaaataagattctttgattttagc 21716825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 21796603 - 21796561
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21796603 gtttagattccaaccctgtaaaataagattctttgattttagc 21796561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 42536206 - 42536248
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42536206 gtttagattccaaccctgtaaaataagattctttgattttagc 42536248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 3370195 - 3370237
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  3370195 gtttagatttcaaccctgtaaaataagattctttgattttagc 3370237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 3859825 - 3859867
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  3859825 gtttagattcgaaccctgtaaaataagattctttgattttagc 3859867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 31795885 - 31795927
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  31795885 gtttagattccaaccctgtaaaataagattctttggttttagc 31795927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 40728264 - 40728222
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  40728264 gtttagattccaaccctttaaaataagattctttgattttagc 40728222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 7006339 - 7006291
Alignment:
Q  393 ttagattccaaccctgtaaaataagattctttgattttagcgcttgacc 441  Q
    ||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  7006339 ttagatttcaaccctgtaaaataagattatttgattttagcccttgacc 7006291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 25642720 - 25642678
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  25642720 gtttagattccaacccagtaaaataagattttttgattttagc 25642678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 433
Target Start/End: Complemental strand, 30668904 - 30668869
Alignment:
Q  398 ttccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||| |||||||||||||||||||||||||||    
T  30668904 ttccaaccatgtaaaataagattctttgattttagc 30668869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 23495777 - 23495680
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||||||||||||||||||||||| |||||         | |||||||||||||||||||||||||||| ||||| |||||| | |||||||||    
T  23495777 ctgtaatttaggcgagtttcggtttaccccctgtaaaaaaaaagattagattccaaccctgtaaaataagattatttgactttagcccctgacctatg 23495680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 26167259 - 26167162
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||| || ||||||||| |||||         |||||||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  26167259 ctgtaatttaggcgaattccggtttaccccctgtaaaaaaaaagtttagattccaaccctgtaaaataaaattctttgattttagcccctgacctatg 26167162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 28038806 - 28038892
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcc-tgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| ||||||||||||||| ||||| |||         |||||||||||||||||||||||||||||||||||||||||||    
T  28038806 ctgtaatttgggcgagtttcggttttcctccctgtaaaaaaaaagtttagattccaaccctgtaaaataagattctttgattttagc 28038892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 24171778 - 24171736
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  24171778 gtttagattccaaccctgtaaaataagattctttggttttagc 24171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 38601403 - 38601445
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  38601403 gtttagattccaaccctgtaaaataagatcctttgattttagc 38601445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 29860736 - 29860696
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgatttta 431  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  29860736 gtttagattccaatcctgtaaaataagattctttgatttta 29860696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 5118836 - 5118752
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttag 432  Q
    |||||||||||| ||||| ||||||||| |||||         |||||||||||||||||||||  ||||||||||| |||||||    
T  5118836 ctgtaatttaggtgagttccggtttaccccctgtaaaaaaaaagtttagattccaaccctgtaatttaagattctttcattttag 5118752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 23494371 - 23494404
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgt 381  Q
    ||||||||| ||||||||||||||||||||||||    
T  23494371 ctgtaatttgggcgagtttcggtttacctcctgt 23494404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 36631034 - 36631088
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  36631034 gtttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 36631088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 10375453 - 10375400
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10375453 tttagattccaaccctgtaaaataagattctttgattttagcccctgacctatg 10375400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 16831044 - 16831002
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16831044 gtttagattccaaccctgtaaaataagattctttgattttagc 16831002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 27361451 - 27361493
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27361451 gtttagattccaaccctgtaaaataagattctttgattttagc 27361493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 46624671 - 46624713
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46624671 gtttagattccaaccctgtaaaataagattctttgattttagc 46624713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 48643330 - 48643288
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48643330 gtttagattccaaccctgtaaaataagattctttgattttagc 48643288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 49763692 - 49763650
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49763692 gtttagattccaaccctgtaaaataagattctttgattttagc 49763650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 50961421 - 50961475
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  50961421 gtttagattccaaccctgtaaaataagattctttaattttagcccctgacctatg 50961475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 22058766 - 22058807
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22058766 tttagattccaaccctgtaaaataagattctttgattttagc 22058807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 7377421 - 7377463
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  7377421 gtttagattccaaccctataaaataagattctttgattttagc 7377463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 20160410 - 20160368
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  20160410 gtttagattccaaccttgtaaaataagattctttgattttagc 20160368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 27904269 - 27904215
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  27904269 gtttaaattccaaccctataaaataagattctttgattttagcccctgacctatg 27904215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 38174128 - 38174168
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgatttta 431  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  38174128 gtttagatttcaaccctataaaataagattctttgatttta 38174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 21813826 - 21813785
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||| | ||||||||| |||||||||||||||||||||    
T  21813826 tttagatttctaccctgtaacataagattctttgattttagc 21813785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 42157 - 42211
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  42157 gtttagattccaaccctgtaaaataagattctttgattttaggccctgacctatg 42211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 3777192 - 3777246
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||||||    
T  3777192 gtttagattccaaccctgtaaattaagattctttgattttagcccctgacctatg 3777246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 38983271 - 38983229
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38983271 gtttagattccaaccctgtaaaataagattctttgattttagc 38983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 39014368 - 39014326
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39014368 gtttagattccaaccctgtaaaataagattctttgattttagc 39014326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 44057208 - 44057250
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44057208 gtttagattccaaccctgtaaaataagattctttgattttagc 44057250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 43323811 - 43323897
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnn-gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||| ||||||||| |||||          |||||||||||||||||||||||||||||| ||||||||||||    
T  43323811 ctgtaatttaggcgagttccggtttaccccctgtaaaaaaaaaagtttagattccaaccctgtaaaataagattatttgattttagc 43323897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 9555908 - 9555950
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  9555908 gtttagattccaaccctgtaaaataaaattctttgattttagc 9555950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 429
Target Start/End: Complemental strand, 26170385 - 26170347
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattt 429  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26170385 gtttagattccaaccctgtaaaataagattctttgattt 26170347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 37483376 - 37483334
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  37483376 gtttagattccaaccctgtaaaataagattatttgattttagc 37483334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 43827170 - 43827212
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  43827170 gtttagattccaaccctataaaataagattctttgattttagc 43827212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 33284444 - 33284497
Alignment:
Q  393 ttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatgc 446  Q
    ||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||    
T  33284444 ttagattccaaccatgtgaaataagattctttgattttagcccctgacctatgc 33284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 20165853 - 20165811
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  20165853 gtttagattccaaccccgtaacataagattctttgattttagc 20165811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 2403739 - 2403781
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2403739 gtttagattccaaccctgtaaaataagattctttgattttagc 2403781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 17183341 - 17183426
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgtnnnnnnnnngtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||| || |||||| |||||         ||||||||||||||| |||||||||||||||||||||||||||    
T  17183341 ctgtaatttaggcgagttccgatttaccccctgtaaaaaaaaagtttagattccaaccttgtaaaataagattctttgattttagc 17183426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 433
Target Start/End: Complemental strand, 19635895 - 19635803
Alignment:
Q  345 cctctgtaatttaggcgagtttcggtttacctcc-tgtnnnnnnnnn---gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||| |||            ||||| |||||||||||||||||||||||||||||||||||||    
T  19635895 cctctgtaatttaggcgagtttcggtttacctccctgtaaaagaaaaaaagtttaaattccaaccctgtaaaataagattctttgattttagc 19635803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 34491221 - 34491263
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  34491221 gtttagattccaaccctgtaaaataagattctttggttttagc 34491263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 18867241 - 18867200
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  18867241 tttagattccaaccctgtaaaataagattatttgattttagc 18867200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 28744869 - 28744828
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  28744869 tttagattccaaccctgtaaaataagattatttgattttagc 28744828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 29056834 - 29056875
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttag 432  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29056834 gtttagattccaaccatgtaaaataagattctttgattttag 29056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 28562841 - 28562883
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  28562841 gtttagataccaaccctgtaaaataagattctttggttttagc 28562883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 3587687 - 3587647
Alignment:
Q  393 ttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  3587687 ttagatttcaaccctgtaaaataagattctttaattttagc 3587647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 18586321 - 18586281
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgatttta 431  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  18586321 gtttagatttcaaccatgtaaaataagattctttgatttta 18586281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 17141173 - 17141135
Alignment:
Q  407 tgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  17141173 tgtaaaataagattctttgattttagcccctgacctatg 17141135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 19634524 - 19634557
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgt 381  Q
    |||||||||||||||||||||||||||| |||||    
T  19634524 ctgtaatttaggcgagtttcggtttaccccctgt 19634557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 29057524 - 29057491
Alignment:
Q  348 ctgtaatttaggcgagtttcggtttacctcctgt 381  Q
    ||||||||| ||||||||||||||||||||||||    
T  29057524 ctgtaatttgggcgagtttcggtttacctcctgt 29057491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 5203774 - 5203732
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5203774 gtttagattccaaccctgtaaaataagattctttgattttagc 5203732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 15249531 - 15249489
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15249531 gtttagattccaaccctgtaaaataagattctttgattttagc 15249489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 18748791 - 18748750
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttag 432  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18748791 gtttagattccaaccctgtaaaataagattctttgattttag 18748750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 43235952 - 43235994
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  43235952 gtttagattacaaccctgtaaaataagattctttgattttagc 43235994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 18860275 - 18860221
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    ||||||||||||| | ||||||||||||||||||||||||| | | |||||||||    
T  18860275 gtttagattccaatcttgtaaaataagattctttgattttaacccctgacctatg 18860221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 42744098 - 42744058
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttag 432  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  42744098 tttagattccaaccctgtaaaataagattatttaattttag 42744058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 9891721 - 9891774
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagcgcttgacctatg 445  Q
    |||||||| ||| |||||||||||||||| |||||||||| | | |||||||||    
T  9891721 tttagatttcaatcctgtaaaataagattatttgattttaacccctgacctatg 9891774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 433
Target Start/End: Complemental strand, 54499 - 54457
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  54499 gtttagatttcaaccctgtaaaataagattctttgattttagc 54457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 6221 - 6261
Alignment:
Q  391 gtttagattccaaccctgtaaaataagattctttgatttta 431  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  6221 gtttagatttcaaccatgtaaaataagattctttgatttta 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 18983 - 19024
Alignment:
Q  392 tttagattccaaccctgtaaaataagattctttgattttagc 433  Q
    |||||||| | ||||||||| |||||||||||||||||||||    
T  18983 tttagatttctaccctgtaacataagattctttgattttagc 19024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University