View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14743_low_3 (Length: 432)
Name: NF14743_low_3
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14743_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 36163170 - 36162764
Alignment:
| Q |
17 |
aaatcatactattgtctatgctgaatgttnnnnnnntttagcattcaaaaggaatgtgcacaggcgattttaagccaaaaggaaactatgcagcgtgttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
36163170 |
aaatcatactattgtctatgctgaatgttaaaaaaatttagcattcaaaaggaatgtgcacaggcaattttaagccaaaaggaaactatgtagcgtgttt |
36163071 |
T |
|
| Q |
117 |
tgggaatgtttcttcacaatttcttttccttggactatcaaatgtttaaaccgatagaagaatgacatttcaattaaatgacccatgtcagcattcactt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
36163070 |
tgggaatgtttcttcacaatttcttttccttggactatcaaatgtttaaaccgatagaagaatgacatttcaattaaatgacccaattcagcattgactt |
36162971 |
T |
|
| Q |
217 |
aatcttgagtagtatttgtcttaatttaaccctccagaaattgcttaagtaatcaatannnnnnnnatgtgaaacggtaaagagttaagaaagaaagggg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36162970 |
aatcttgagtagtatttgtcttaatttaaccctccagaaattgcttaagtaatcaatattttttttatgtgaaacggtaaagagttaagaaagaaagggg |
36162871 |
T |
|
| Q |
317 |
gtgggattgagagaagaaaaagggtagactttattttttgaagaagaaga--aaaggggaagacttttgatatatagcattctcaatcaggtactagatt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||| |||||||||||||| |
|
|
| T |
36162870 |
gtgggattgagagaagaaaaagggtagactttattttttgaagaagaagaagaaaagggaagatttttg----atagcattctcattcaggtactagatt |
36162775 |
T |
|
| Q |
415 |
cgttccttcat |
425 |
Q |
| |
|
||||||||||| |
|
|
| T |
36162774 |
cgttccttcat |
36162764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University