View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14743_low_4 (Length: 360)
Name: NF14743_low_4
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14743_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 26143158 - 26142818
Alignment:
| Q |
1 |
agcattgggtgaacaagtgagtttagtgatgaatgattacccaaaactaaagctaacacaaggaagaaaagtgttggaaattcgaccaattattaaatgg |
100 |
Q |
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| T |
26143158 |
agcattgggtgaacaagtaagcttagtgatgaatgattacccaaaactaaagctaacacaagggagaaaagtgttggaaattcgaccaattattaaatgg |
26143059 |
T |
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| Q |
101 |
gacaaaggaagggctcttgaatttttgctagagtcacttggtaagtttttcatgcaataatatatggtatttctctgagaattaattccattaattaatt |
200 |
Q |
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| T |
26143058 |
gacaaaggaagggctcttgaatttttgctagagtcacttggtaagtttttcatgcaataatatatagtatttctcagagaattaattccattaattaatt |
26142959 |
T |
|
| Q |
201 |
tatacaaatatttcatgagatgtatgtcctaaatcctaattaattaannnnnnnnnnaatttctaggttttgcgaattctaaagaagtatttccaatcta |
300 |
Q |
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| T |
26142958 |
tatacaaatatttcattagatgtatgtcctaaatcctaattaattaa---tttttttaatttctaggttttgcaaattctaaaggagtatttccaatcta |
26142862 |
T |
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| Q |
301 |
tattggtgacgatagaaccgacgaagatgcttttaaggtaaaat |
344 |
Q |
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| T |
26142861 |
tattggtgacgatagaaccgacgaagatgcttttaaggtaaaat |
26142818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 33494041 - 33493946
Alignment:
| Q |
32 |
aatgattacccaaaactaaagctaacacaaggaagaaaagtgttggaaattcgaccaattattaaatgggacaaaggaagggctcttgaatttttg |
127 |
Q |
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| T |
33494041 |
aatgaatacccaaaacttaagctaacacaaggaagaaaagtgcttgagattcgtcccactatcaaatgggacaagggcaaggctcttgaatttttg |
33493946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 37978993 - 37978935
Alignment:
| Q |
92 |
attaaatgggacaaaggaagggctcttgaatttttgctagagtcacttggtaagttttt |
150 |
Q |
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| T |
37978993 |
attaaatgggacaagggcaaggccctcgaatttttgctagagtcacttggtaagttttt |
37978935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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