View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14743_low_7 (Length: 304)
Name: NF14743_low_7
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14743_low_7 |
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| [»] scaffold1430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 6297657 - 6297370
Alignment:
| Q |
3 |
gttttaccattgctaaaccttcctgtagaacaatcattgaaatctatgccatatggaaatgtattaaccttaacaattgtattcaaattgttattgtttc |
102 |
Q |
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| T |
6297657 |
gttttaccattgctaaaccttcctgtagaacaattattgaaatctatgccatatggaaatgtattaaccttagcaattgtattcaaattgttattgtttc |
6297558 |
T |
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| Q |
103 |
cagcatctacgcttgaatcaccaaaaacatacaaagctggcacaatgctctttgtatgataagaattggccaagaaaatttgtagggttagaagataaat |
202 |
Q |
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| T |
6297557 |
cagcatctacgcttgaatcaccaaaaacatacaaagctggcacaaggctctttgcacgataagaattggccaagaaaacttgtagagttagaagataaat |
6297458 |
T |
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| Q |
203 |
aacccaaaaaactttaaagataaacatattttgttgcacaacgtatatagagatggatgaatgatattaaggtcttcaatatatatat |
290 |
Q |
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| T |
6297457 |
aacccaaaaaactttaaagataaacatattttgttgcacaacgtatataaagatggatgaatgatattaaggtcttcaatatatatat |
6297370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 25462056 - 25461819
Alignment:
| Q |
3 |
gttttaccattgctaaaccttcctgtagaacaatcattgaaatctatgccatatggaaatgtattaaccttaacaattgtattcaaattgttattgtttc |
102 |
Q |
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| T |
25462056 |
gtttttccattgctaaaccttcctgtagaacaattattgaaatctatgccatatggaaatatattaaccttagcaggtgtattcaaattgttattgtttc |
25461957 |
T |
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| Q |
103 |
cagcatctacgcttgaatcaccaaaaacatacaaagctggcacaatgctctttgtatgataagaattggccaagaaaatttgtagggttagaagataaat |
202 |
Q |
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| T |
25461956 |
cagcatctacggttgaatcaccaaaaacatacaaagcaggcacaaggctctttgtacaataagaatttgccaacaaaatttggagggttagaagataaat |
25461857 |
T |
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| Q |
203 |
aacccaaaaaactttaaagataaacatattttgttgca |
240 |
Q |
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| T |
25461856 |
aaccataaaaactttgaaaataaacatttttggttgca |
25461819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1430 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold1430
Description:
Target: scaffold1430; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 779 - 531
Alignment:
| Q |
3 |
gttttaccattgctaaaccttcctgtagaacaatcattgaaatctatgccatatggaaatgtattaaccttaacaattgtattcaaattgttattgt-tt |
101 |
Q |
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| T |
779 |
gttttaccattgctaaaccttcctgtagaacaattattgaaatctatgtcatacggaaatgtattaaccttagcatctgtattcatattgttattatatt |
680 |
T |
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| Q |
102 |
ccagcatctacgcttgaatcaccaaaaacatacaaagctggcacaatgctctttgtatgataagaattggccaagaaaatttgtagggttagaagataaa |
201 |
Q |
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| T |
679 |
ccagcatctacggttgaatcaccaaaaacatacaaagctgtcataaggctctttgtacaataagaatttgctaacaaaagttggagggttagaagataaa |
580 |
T |
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| Q |
202 |
taacccaaaaaactttaaagataaacatattttgttgcacaacgtatat |
250 |
Q |
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| T |
579 |
taacccataaaactttagagataaacatttttcgttgcataatgtatat |
531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 19435901 - 19435661
Alignment:
| Q |
26 |
tgtagaacaatcattgaaatctatgccatatggaaatgtattaaccttaacaattgtattcaaattgttattgtttccagcatctacgcttgaatcacca |
125 |
Q |
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| T |
19435901 |
tgtagaacaattattaaaatctatgccatatggaaacacattagccttagcagctgtattcaaattgttattgtttccaacatctacagttgaatcacca |
19435802 |
T |
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| Q |
126 |
aaaacatacaaagctggcacaatgctctttgtatgataagaattggccaagaaaatttgtagggttagaagataaataacccaaaaaactttaaagataa |
225 |
Q |
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| T |
19435801 |
aaaacatacaaagttggcacaaggttctttgtgaaataagaatttgctaacaaaagttgaaggattagaagataaataacccaaaaaaatttaaagataa |
19435702 |
T |
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| Q |
226 |
acatattttgttgcacaacgtatatagagatggatgaatgat |
267 |
Q |
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| T |
19435701 |
acattttttttagcacaacatatatgaagatgg-tgaatgat |
19435661 |
T |
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