View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14743_low_8 (Length: 304)

Name: NF14743_low_8
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14743_low_8
NF14743_low_8
[»] chr3 (61 HSPs)
chr3 (1-304)||(2442003-2442306)
chr3 (212-269)||(2644357-2644414)
chr3 (212-269)||(2659147-2659204)
chr3 (212-268)||(2696727-2696783)
chr3 (212-268)||(4142129-4142185)
chr3 (212-268)||(4157939-4157995)
chr3 (202-268)||(3754600-3754666)
chr3 (219-269)||(13498223-13498273)
chr3 (188-269)||(7942484-7942565)
chr3 (217-269)||(754609-754661)
chr3 (217-269)||(2456248-2456300)
chr3 (217-269)||(7324431-7324483)
chr3 (205-268)||(989396-989459)
chr3 (217-268)||(1891064-1891115)
chr3 (213-268)||(7432050-7432105)
chr3 (202-268)||(1940564-1940630)
chr3 (216-266)||(2459277-2459327)
chr3 (217-267)||(2492083-2492133)
chr3 (217-267)||(2631358-2631408)
chr3 (219-269)||(9561987-9562037)
chr3 (205-271)||(12133094-12133160)
chr3 (212-269)||(2476633-2476690)
chr3 (212-269)||(2502147-2502204)
chr3 (212-269)||(7334234-7334291)
chr3 (219-268)||(9608346-9608395)
chr3 (215-267)||(768327-768379)
chr3 (217-269)||(771499-771551)
chr3 (212-268)||(803213-803269)
chr3 (217-269)||(7430536-7430588)
chr3 (217-269)||(9565829-9565881)
chr3 (217-269)||(37753345-37753397)
chr3 (217-269)||(43991959-43992011)
chr3 (205-268)||(968671-968734)
chr3 (205-268)||(1931142-1931205)
chr3 (9-47)||(763341-763379)
chr3 (214-268)||(956381-956435)
chr3 (217-267)||(7442977-7443027)
chr3 (207-268)||(1007461-1007522)
chr3 (4-41)||(1930950-1930987)
chr3 (212-268)||(1022489-1022545)
chr3 (217-269)||(1437995-1438046)
chr3 (4-40)||(1889373-1889409)
chr3 (4-40)||(1897452-1897488)
chr3 (4-40)||(1906898-1906934)
chr3 (4-40)||(2932152-2932188)
chr3 (217-265)||(9587185-9587233)
chr3 (215-267)||(9594622-9594674)
chr3 (217-256)||(746383-746422)
chr3 (212-259)||(2686307-2686354)
chr3 (206-268)||(1936969-1937031)
chr3 (216-266)||(7398178-7398228)
chr3 (216-266)||(23197014-23197064)
chr3 (221-266)||(997578-997623)
chr3 (221-266)||(1013968-1014013)
chr3 (217-269)||(783799-783851)
chr3 (212-268)||(792899-792955)
chr3 (4-40)||(1890839-1890875)
chr3 (4-40)||(1936761-1936797)
chr3 (212-268)||(2678394-2678450)
chr3 (216-264)||(3746012-3746060)
chr3 (9-41)||(12218278-12218310)
[»] chr7 (3 HSPs)
chr7 (193-271)||(1078136-1078214)
chr7 (215-264)||(3927063-3927112)
chr7 (218-268)||(1421170-1421220)
[»] chr2 (12 HSPs)
chr2 (215-268)||(7160752-7160805)
chr2 (214-258)||(6538844-6538888)
chr2 (215-268)||(7156190-7156243)
chr2 (216-268)||(36577366-36577418)
chr2 (215-265)||(7168688-7168738)
chr2 (215-268)||(7174371-7174424)
chr2 (215-268)||(11237693-11237746)
chr2 (217-268)||(33038160-33038211)
chr2 (217-267)||(33020314-33020364)
chr2 (215-268)||(7199976-7200029)
chr2 (217-269)||(33026656-33026708)
chr2 (217-269)||(34560917-34560969)
[»] chr5 (14 HSPs)
chr5 (216-268)||(11081813-11081865)
chr5 (212-268)||(23766857-23766913)
chr5 (212-268)||(23816705-23816761)
chr5 (212-268)||(23769641-23769697)
chr5 (212-268)||(23819489-23819545)
chr5 (219-269)||(20292994-20293044)
chr5 (239-275)||(2067074-2067110)
chr5 (219-269)||(20301442-20301492)
chr5 (219-269)||(20305855-20305905)
chr5 (219-269)||(20310259-20310309)
chr5 (126-171)||(11081910-11081955)
chr5 (212-268)||(23732167-23732223)
chr5 (213-268)||(1427689-1427744)
chr5 (212-268)||(23861021-23861077)
[»] chr6 (14 HSPs)
chr6 (209-257)||(176345-176393)
chr6 (205-265)||(370773-370833)
chr6 (212-258)||(1442103-1442149)
chr6 (217-267)||(24417486-24417536)
chr6 (214-264)||(7564748-7564798)
chr6 (216-269)||(1470922-1470975)
chr6 (219-269)||(9819831-9819881)
chr6 (216-266)||(19119065-19119115)
chr6 (216-266)||(19126359-19126409)
chr6 (216-269)||(1459540-1459593)
chr6 (219-264)||(9703888-9703933)
chr6 (216-268)||(4183000-4183052)
chr6 (216-268)||(4743844-4743896)
chr6 (216-268)||(17368366-17368418)
[»] chr4 (6 HSPs)
chr4 (206-264)||(20016174-20016232)
chr4 (206-268)||(20019761-20019823)
chr4 (205-265)||(22672115-22672175)
chr4 (216-258)||(55419792-55419834)
chr4 (5-40)||(22671921-22671956)
chr4 (5-41)||(20019551-20019587)
[»] scaffold0044 (1 HSPs)
scaffold0044 (217-264)||(89147-89194)
[»] scaffold0015 (1 HSPs)
scaffold0015 (218-268)||(32330-32380)
[»] chr1 (7 HSPs)
chr1 (214-264)||(51381452-51381502)
chr1 (216-268)||(51858606-51858658)
chr1 (227-268)||(23896147-23896188)
chr1 (219-268)||(24629213-24629262)
chr1 (219-268)||(51782799-51782848)
chr1 (216-268)||(51756749-51756801)
chr1 (216-268)||(51854947-51854999)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 2442306 - 2442003
Alignment:
Q  1 acatctagcattaagaacaaggtgatattaaactctcaacagagactcctaagatgttttgaaaatcactagacttgaaagtaccactcctggaatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2442306 acatctagcattaagaacaaggtgatattaaactctcaacagagactcctaagatgttttgaaaatcactagactttaaagtaccactcctggaatcgta 2442207  T
Q  101 aacaaacgaattaaacgcccctgtcaacttcaacaacacttgatcatcctcaaataaatataccggcttggcagaaatatgagatacacctcgatctacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442206 aacaaacgaattaaacgcccctgtcaacttcaacaacacttgatcatcctcaaataaatataccggcttggcagaaatatgagatacacctcgatctacc 2442107  T
Q  201 ctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatccttcataaccgaatcaaaatcactatcaccat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2442106 ctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatccttcagaaccgaatcaaaatcactatcaccat 2442007  T
Q  301 aagt 304  Q
    ||||    
T  2442006 aagt 2442003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 2644357 - 2644414
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2644357 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2644414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 2659147 - 2659204
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2659147 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 2696727 - 2696783
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 4142129 - 4142185
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  4142129 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 4157939 - 4157995
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 3754666 - 3754600
Alignment:
Q  202 tgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| || ||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  3754666 tgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 13498273 - 13498223
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcc 13498223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 7942565 - 7942484
Alignment:
Q  188 acctcgatctaccctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||| || || ||| || | || |||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  7942565 acctcgatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatcc 7942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 754609 - 754661
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatcc 754661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 2456300 - 2456248
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcc 2456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 7324431 - 7324483
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatcc 7324483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 989459 - 989396
Alignment:
Q  205 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||||||    
T  989459 aagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 989396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 1891064 - 1891115
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 7432050 - 7432105
Alignment:
Q  213 gtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  7432050 gtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatc 7432105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 1940564 - 1940630
Alignment:
Q  202 tgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||| |||||||||||||||||| || |||| ||||||||  |||||||||| |||||||||    
T  1940564 tgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatc 1940630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 2459327 - 2459277
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 2492133 - 2492083
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 9561987 - 9562037
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatcc 9562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 12133160 - 12133094
Alignment:
Q  205 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcctt 271  Q
    |||||| | |||||||||||||||| || ||| |||||||||||||| |||||| ||||||||||||    
T  12133160 aagaaacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcctt 12133094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 2476690 - 2476633
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||| |||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  2476690 agtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 2476633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 2502204 - 2502147
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||| ||| |||||||||| | || |||||||||||||||||||||||||||||||||    
T  2502204 agtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 7334234 - 7334291
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||| |||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  7334234 agtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcc 7334291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 9608346 - 9608395
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatc 9608395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 768327 - 768379
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||||||    
T  768327 gaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 771499 - 771551
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| ||| |||||||||| |||||||||| ||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcc 771551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 803213 - 803269
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||| ||||||||||| |||||||||||||| || ||||||| |||||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatc 803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 7430536 - 7430588
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    ||||||||||| |||| | |||||||||||||| |||||||||||||||||||    
T  7430536 acaatttagtctaagactttttatttccatacttcttcataatccaaacatcc 7430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 9565829 - 9565881
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||||||||||    
T  9565829 acaatttagtccaagactcttgatctccgtactccttcataatccaaacatcc 9565881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 37753345 - 37753397
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| ||||| |||||||| |||| ||||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatcc 37753397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 43992011 - 43991959
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    ||||||| |||||||| ||| |||||||||| |||||||||||||||||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatcc 43991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 968734 - 968671
Alignment:
Q  205 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| |||||| ||||||||||| || |||||||||||||  |||||||||| |||||||||    
T  968734 aagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatc 968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 1931142 - 1931205
Alignment:
Q  205 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| |||||||||||||||||| || |||||||||||||  ||| |||||| |||||||||    
T  1931142 aagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatc 1931205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 763341 - 763379
Alignment:
Q  9 cattaagaacaaggtgatattaaactctcaacagagact 47  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  763341 cattaagaacaaggtgatattaaactctcaacatagact 763379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 956435 - 956381
Alignment:
Q  214 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||  |||||| ||||| |||||||| ||||||||||||||||||||    
T  956435 tgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 7442977 - 7443027
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    |||| ||||||||||| |||| |||||||||||||||||| ||||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 1007522 - 1007461
Alignment:
Q  207 gaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||| |||||||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatc 1007461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 1930950 - 1930987
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaaca 41  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  1930950 tctagcattaagaacaaggtgatatcaaactctcaaca 1930987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 1022545 - 1022489
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  1022545 agtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatc 1022489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 1438046 - 1437995
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataa-ccaaacatcc 1437995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 1889373 - 1889409
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaac 40  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1889373 tctagcattaagaacaaggtgatatcaaactctcaac 1889409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 1897452 - 1897488
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaac 40  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1897452 tctagcattaagaacaaggtgatatcaaactctcaac 1897488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 1906898 - 1906934
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaac 40  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1906898 tctagcattaagaacaaggtgatatcaaactctcaac 1906934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 2932188 - 2932152
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaac 40  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2932188 tctagcattaagaacaaggtgatatcaaactctcaac 2932152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9587185 - 9587233
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaac 265  Q
    ||||||| |||||||  |||||||||||||| |||||||||||||||||    
T  9587185 acaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 9594622 - 9594674
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    |||||||||||||||||| |||| |||||| ||||  ||||||||||||||||    
T  9594622 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 746383 - 746422
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcat 256  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 2686307 - 2686354
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataat 259  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||||    
T  2686307 agtgaacaatttattccaagactctttttttccatattccttcataat 2686354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 1936969 - 1937031
Alignment:
Q  206 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||| |||||||||||||| ||| || |||||||||  ||| |||||||||| |||||||||    
T  1936969 agaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatc 1937031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 7398178 - 7398228
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    ||||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  7398178 aacaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 23197064 - 23197014
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    ||||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  221 tttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    |||||||||||| |||||||||||||| |||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  221 tttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    |||||||||||| |||||||||||||| |||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 783799 - 783851
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    ||||||||||||| |  | | |||||||||| |||||||||||||||||||||    
T  783799 acaatttagtccatggctttgtatttccatattccttcataatccaaacatcc 783851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 792899 - 792955
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| |||||| ||||||| || |  || ||||||||||||||||||||||||||    
T  792899 agtgaataatttactccaagattcctctttaccatactccttcataatccaaacatc 792955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 1890839 - 1890875
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaac 40  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  1890839 tctagcattaagaacaaggcgatatcaaactctcaac 1890875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 1936761 - 1936797
Alignment:
Q  4 tctagcattaagaacaaggtgatattaaactctcaac 40  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  1936761 tctagcattaaaaacaaggtgatatcaaactctcaac 1936797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 2678394 - 2678450
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||| || ||||| |||||||| |  ||||||| |||||||||    
T  2678394 agtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatc 2678450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 3746060 - 3746012
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    ||||||||||||||||| ||||  ||| |||| ||||||||||||||||    
T  3746060 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 3746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 12218310 - 12218278
Alignment:
Q  9 cattaagaacaaggtgatattaaactctcaaca 41  Q
    |||||||||||||||||||| ||||||||||||    
T  12218310 cattaagaacaaggtgatatcaaactctcaaca 12218278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 1078136 - 1078214
Alignment:
Q  193 gatctaccctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcctt 271  Q
    ||||| ||||| |||||| | |||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||||    
T  1078136 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcctt 1078214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 1421170 - 1421220
Alignment:
Q  218 caatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||| ||||||| ||||||||||| || |||||||||| |||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatc 1421220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7160752 - 7160805
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 6538888 - 6538844
Alignment:
Q  214 tgaacaatttagtccaagaatctttatttccatactccttcataa 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7156190 - 7156243
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  7156190 gaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 7168688 - 7168738
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaac 265  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7174371 - 7174424
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||| ||| |||||    
T  7174371 gaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 11237746 - 11237693
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||  ||| ||||||||||||||| ||||| |||||||||    
T  11237746 gaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 11237693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 33038211 - 33038160
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||| |||||||||| | ||| |||||||| ||||||||||||||||||||    
T  33038211 acaatctagtccaagactttttgtttccatattccttcataatccaaacatc 33038160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 33020364 - 33020314
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    ||||| |||||||||| | |||||||||||| |||||||||||||| ||||    
T  33020364 acaatctagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7199976 - 7200029
Alignment:
Q  215 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||| ||| |||||||| || ||||||| |||||||||||| |||||||||    
T  7199976 gaacaatctagcccaagaattttcatttccaaactccttcataacccaaacatc 7200029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 33026708 - 33026656
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    ||||| |||||||||| | |||||||||||| | |||||||| ||||||||||    
T  33026708 acaatctagtccaagactttttatttccatattgcttcataacccaaacatcc 33026656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 34560917 - 34560969
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||||| | |||||||||||| || ||||||||  ||||||||    
T  34560917 acaatttagtccaagattttttatttccatattctttcataattgaaacatcc 34560969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 11081865 - 11081813
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 23766857 - 23766913
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 23816705 - 23816761
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 23769641 - 23769697
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  23769641 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23769697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 23819489 - 23819545
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  23819489 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 20293044 - 20292994
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatcc 20292994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 2067074 - 2067110
Alignment:
Q  239 atttccatactccttcataatccaaacatccttcata 275  Q
    |||||||||||||||||||||||||||||||||||||    
T  2067074 atttccatactccttcataatccaaacatccttcata 2067110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 20301492 - 20301442
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatcc 20301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 20305905 - 20305855
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatcc 20305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 20310309 - 20310259
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatcc 20310259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 11081955 - 11081910
Alignment:
Q  126 aacttcaacaacacttgatcatcctcaaataaatataccggcttgg 171  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||    
T  11081955 aacttcaacaacacttgatcatcctcaaatatatatactgccttgg 11081910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 23732223 - 23732167
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||| |||| |||||||  ||||||| ||||| ||||||||||||||||||||    
T  23732223 agtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatc 23732167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 1427689 - 1427744
Alignment:
Q  213 gtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||| |||| ||||||| ||| ||||||||||||| ||||||| |||||||||    
T  1427689 gtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatc 1427744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 23861021 - 23861077
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||||||  ||||  | ||||| |||||||| |||||||||||    
T  23861021 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 23861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 176393 - 176345
Alignment:
Q  209 aagagtgaacaatttagtccaagaatctttatttccatactccttcata 257  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||    
T  176393 aagagtgaacaatttagtccaagaatctttatttccataatcattcata 176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 370773 - 370833
Alignment:
Q  205 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaac 265  Q
    |||||| | |||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  370773 aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 1442103 - 1442149
Alignment:
Q  212 agtgaacaatttagtccaagaatctttatttccatactccttcataa 258  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  1442103 agtgaacaatttagtccaagaatctttaattccataatccttcataa 1442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 267  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 7564748 - 7564798
Alignment:
Q  214 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    |||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  7564748 tgaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 1470922 - 1470975
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||| ||||||||||||||||||||| || ||||||| ||||| ||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatcc 1470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    |||||||||||||| ||| |||||||||| |||||||||| ||||| ||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    ||||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 266  Q
    ||||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 1459540 - 1459593
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 269  Q
    ||||||||||||||||| |||||||||||| | || ||||||| ||||| ||||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcc 1459593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 4183000 - 4183052
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 4183052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 4743844 - 4743896
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 4743896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 17368418 - 17368366
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||||||||||||||  ||| |||||||||||| ||||| | |||||||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatc 17368366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 20016174 - 20016232
Alignment:
Q  206 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||||| |||||||    
T  20016174 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 20019761 - 20019823
Alignment:
Q  206 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||||| | |||||||||    
T  20019761 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 20019823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 22672115 - 22672175
Alignment:
Q  205 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaac 265  Q
    |||||| ||||||||||||||||||||| || ||||||||||| |||||||| | ||||||    
T  22672115 aagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 55419834 - 55419792
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataa 258  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataa 55419792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 22671921 - 22671956
Alignment:
Q  5 ctagcattaagaacaaggtgatattaaactctcaac 40  Q
    |||||| |||||||||||||||||||||||||||||    
T  22671921 ctagcactaagaacaaggtgatattaaactctcaac 22671956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 20019551 - 20019587
Alignment:
Q  5 ctagcattaagaacaaggtgatattaaactctcaaca 41  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  20019551 ctagcattaaaaacaaggtgatatcaaactctcaaca 20019587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 89194 - 89147
Alignment:
Q  217 acaatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 32330 - 32380
Alignment:
Q  218 caatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 32380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 51381452 - 51381502
Alignment:
Q  214 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaa 264  Q
    ||||||||||||||||||| |||| ||||||||| || |||||||||||||    
T  51381452 tgaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 51858658 - 51858606
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| |||  ||||||||| |||||||| |||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatc 51858606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 23896147 - 23896188
Alignment:
Q  227 ccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| |||||||||||||| |||||||||| |||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatc 23896188  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| ||||||| ||||||||||| || |||||||||| |||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 51782848 - 51782799
Alignment:
Q  219 aatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    |||||| ||||||| | || ||||||||| ||||||||||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatc 51782799  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 51756749 - 51756801
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 51756801  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 51854999 - 51854947
Alignment:
Q  216 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 268  Q
    ||||||||||||||||| |||  ||||||||| || ||||| |||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatc 51854947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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