View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14743_low_9 (Length: 276)
Name: NF14743_low_9
Description: NF14743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14743_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 32854468 - 32854633
Alignment:
| Q |
35 |
gaattgggcgttcttcgtatccgtcttcaaccacatcccacagatcttgagagataaatattgtttccatttgagaattccagtaatcatagtgttcacc |
134 |
Q |
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| T |
32854468 |
gaattgggcgttcttcatatccgtcttcaaccacatcccacagatcttgagagataaatatagtttccatttgagaattccagtaatcatagtgttcacc |
32854567 |
T |
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| Q |
135 |
attgaaaactggaatttgatttgttgtgtaggagaagattgaatttgaatttgacgttgccattcc |
200 |
Q |
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| T |
32854568 |
attgaaaactggaatttgatttgttgtgtaagagaagattgaatttgaatttgacgttgccattcc |
32854633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 37177603 - 37177768
Alignment:
| Q |
35 |
gaattgggcgttcttcgtatccgtcttcaaccacatcccacagatcttgagagataaatattgtttccatttgagaattccagtaatcatagtgttcacc |
134 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37177603 |
gaattgggcgttcttcatatccgtcttcaaccacatcccacagatcttgagagataaatatagtttccatttgagaattccagtaatcatagtgttcaca |
37177702 |
T |
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| Q |
135 |
attgaaaactggaatttgatttgttgtgtaggagaagattgaatttgaatttgacgttgccattcc |
200 |
Q |
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| T |
37177703 |
attgaaaactggaatttgatttgttgtgtaagagaagattgaatttgaatttgacgttgccattcc |
37177768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 37177787 - 37177829
Alignment:
| Q |
209 |
aataaaccaggctgctctggtacgaaaacggttggagaaagag |
251 |
Q |
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| T |
37177787 |
aataaaccaggctgctctggtaccaaaactgttggagaaagag |
37177829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 32854648 - 32854690
Alignment:
| Q |
209 |
aataaaccaggctgctctggtacgaaaacggttggagaaagag |
251 |
Q |
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| T |
32854648 |
aataaaccaggctgctctggtaccaaaactgttggataaagag |
32854690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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