View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14744_high_1 (Length: 829)

Name: NF14744_high_1
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14744_high_1
NF14744_high_1
[»] chr5 (1 HSPs)
chr5 (19-807)||(6202982-6203773)


Alignment Details
Target: chr5 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 19 - 807
Target Start/End: Complemental strand, 6203773 - 6202982
Alignment:
Q  19 gaatcggagaaacccaaacggaagaaagagaaagacgcttcacagatcaagcgtcct---gtttcttcttctgcggctaaattatcagctgctgctgcta 115  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  6203773 gaatcggagaaacctcaacggaagaaagagaaagatgcttcacagatcaagcgtccttctgtttcttcttctgcggctaaattatcagctgctgctgcta 6203674  T
Q  116 tgatgggcggatcaagagtttcgtcgatgtttacttctgctaattttaagaaaagtagagatgataaggtttgtgagagtattgtagatgatgttcttaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203673 tgatgggcggatcaagagtttcgtcgatgtttacttctgctaattttaagaaaagtagagatgataaggtttgtgagagtattgtagatgatgttcttaa 6203574  T
Q  216 ggagtttgcgccggatgagaacgataaaattagtcggagaaaggttcaatcaaattcgtcttctgttgttaatgatgcacgtattaaggctaaacctaag 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6203573 ggagtttgcgccggatgagaacgataaaattagtcggagaaaggttcaatcaaattcgtcttctgttgttaatgatgcacgtattaaggctatacctaag 6203474  T
Q  316 ccctctgctgaatctgtattaggctcttttgcgagtgaaaatttcacgaaaattggtaatggtggaaatggtgaagttgaatctgttagggttaataagg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6203473 ccctctgctgaatctgtattaggctcttttgcgagtgaaaatttcacgaaaattggtaatcgtggaaatggtgaagttgaatctgttagggttaataagg 6203374  T
Q  416 ataaggataatggatctaggttagggttagtggaaaagagtgaagtagaagtgaatgagagtttgggaaattgcgagggaggaatggcggtggaagacaa 515  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6203373 atagggataatggatctaggttagggttagtggaaaagagtgaagtagaagtgaatgagagtttgggaaattgcgagggaggaatggtggtggaagacaa 6203274  T
Q  516 tgaatgtggtaacgggcatttagttgaagagaaagtggcgtatgtgaaagacgaagaaatggaagtgaaacctgttgtgaaaaaggagggttttactttg 615  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203273 tgaatgtggtaacgaggatttagttgaagagaaagtggcgtatgtgaaagacgaagaaatggaagtgaaacctgttgtgaaaaaggagggttttactttg 6203174  T
Q  616 aatgcgaaagttagtgaagaagcggtggatccgaagttgtgtgctacggctggatggcaggcggctaggagtggtggaggtggaggtggggaggtaaatg 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203173 aatgcgaaagttagtgaagaagcggtggatccgaagttgtgtgctacggctggatggcaggcggctaggagtggtggaggtggaggtggggaggtaaatg 6203074  T
Q  716 ttgctgatacgaataatcaacaacagacggagtttaatttggagccagaggggtcgttgcctttttacatacttgatgcttatgaggagtat 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203073 ttgctgatacgaataatcaacaacagacggagtttaatttggagccagaggggtcgttgcctttttacatacttgatgcttatgaggagtat 6202982  T

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