View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_high_22 (Length: 230)
Name: NF14744_high_22
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_high_22 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1046543 - 1046755
Alignment:
| Q |
1 |
aggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046543 |
aggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaacatcccaaaaagaagaatagtttgggttgcaaaccgtgataat |
1046642 |
T |
|
| Q |
101 |
ccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046643 |
ccaatcaaagacaacaattccaactcaaccatgttgatcataagcaacgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaa |
1046742 |
T |
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| Q |
201 |
caaacatcacaac |
213 |
Q |
| |
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||||||||||||| |
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| T |
1046743 |
caaacatcacaac |
1046755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1071356 - 1071568
Alignment:
| Q |
1 |
aggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1071356 |
aggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgatgat |
1071455 |
T |
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| Q |
101 |
ccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaa |
200 |
Q |
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| T |
1071456 |
ccaatcaaggacaacaactccaactcaaccatgttgatcatgagcaaagagggaaaccttgaactacttaccaacaacaatcaaacacttgtttggtcaa |
1071555 |
T |
|
| Q |
201 |
caaacatcacaac |
213 |
Q |
| |
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||||||||||||| |
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| T |
1071556 |
caaacatcacaac |
1071568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1103573 - 1103785
Alignment:
| Q |
1 |
aggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103573 |
aggctttttcacaccaggtagttcaacaaatcgctacgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataat |
1103672 |
T |
|
| Q |
101 |
ccaatcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaa |
200 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||| | | ||||| |||||||||| ||||||||||||||||||| |
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| T |
1103673 |
ccaatcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaaccttgaaatacttaccaacaacaatcaaacacttgtttggtcaa |
1103772 |
T |
|
| Q |
201 |
caaacatcacaac |
213 |
Q |
| |
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||||||||||||| |
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| T |
1103773 |
caaacatcacaac |
1103785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 1087024 - 1087229
Alignment:
| Q |
5 |
tttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaa |
104 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||| |
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| T |
1087024 |
tttttcacaccaggtagttccacaaatcgctatgtgggaatatggtacaaaaatatgcctaa---tagaatagtttgggttgcaaaccgtgatgatccaa |
1087120 |
T |
|
| Q |
105 |
tcgaagacaacaattccaactcaaccatgttgatcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaa |
204 |
Q |
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|| ||||||||| ||||||||||||||||||||||| |||||||| |||||||| | | ||||| |||||||||| ||||||||||||||||||||||| |
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| T |
1087121 |
tcaaagacaacacctccaactcaaccatgttgatcatgagcaatgatggaaaccttgaaatacttaccaacaacaatcaaacacttgtttggtcaacaaa |
1087220 |
T |
|
| Q |
205 |
catcacaac |
213 |
Q |
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||||||||| |
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| T |
1087221 |
catcacaac |
1087229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 10552 - 10453
Alignment:
| Q |
14 |
ccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagaca |
113 |
Q |
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||||||||||| || || |||||||| ||||| ||||||||||||||||| |||||| | ||||||||||| || ||||| ||||||||| |||||| |
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| T |
10552 |
ccaggtagttccacgaaccgctatgttggaatttggtacaaaaatatcccggttagaagagttgtttgggttgccaatcgtgacaatccaatcaaagaca |
10453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 22692433 - 22692326
Alignment:
| Q |
5 |
tttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaa |
104 |
Q |
| |
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||||||| |||||||||||| |||| |||||||| ||| | |||||||||||||| ||| |||||| | ||||||||| |||||||||||||| | |
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| T |
22692433 |
tttttcagtccaggtagttcatcaaaccgctatgtcggactttggtacaaaaatattccagttagaagagtggtttgggttctcaaccgtgataatccga |
22692334 |
T |
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| Q |
105 |
tcgaagac |
112 |
Q |
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|| ||||| |
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| T |
22692333 |
tcaaagac |
22692326 |
T |
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