View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_high_7 (Length: 400)
Name: NF14744_high_7
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 158 - 381
Target Start/End: Original strand, 49009029 - 49009253
Alignment:
| Q |
158 |
taaatgacgaatttaagtaagaaacgctccttcaatgatgttggtggccatcatccatggtag-aatgattcccggtagcgaaggtgtacttgtaaatac |
256 |
Q |
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| T |
49009029 |
taaatgacgaatttaagtaagaaacgctccttcaatgatgttggtggccatcatccatggtagaaatgattcccggtagcgaaggtgtacttataaatac |
49009128 |
T |
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| Q |
257 |
ttttacgttcaag--tatatgatcgagatatgtataggtttagaataaggcattgcttgatatgtgattagtgcaaggctttatatagttcaaagaagat |
354 |
Q |
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| T |
49009129 |
tttgacattcaagtatatatgatcgagatatgtataggtttggaataaggcattgcttgatatgtga-tggtgcaaggc-ttatatagtttaaagaagat |
49009226 |
T |
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| Q |
355 |
gatatcacgcttgggtcaactggaaag |
381 |
Q |
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| T |
49009227 |
gatatcacgcttgggtcaactggaaag |
49009253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 49004735 - 49004875
Alignment:
| Q |
18 |
atgtatactcttaataaaagaaattaacatatttcttgagagaaaaaatgacgaagaaaaaacaaatggtagacgattatcagaatgtaccggcgttcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |
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| T |
49004735 |
atgtatactcttaataaaagaaattaacatatttcttgagagagaaaatgacgaagaaaaaacaaatgatagacgattatcagaatgcaccggcgttaaa |
49004834 |
T |
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| Q |
118 |
attccttcgtctggtgagaactcaagtttatcaaaggatat |
158 |
Q |
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| T |
49004835 |
attccttgttctggtgagaatttaagtttatcaaaggatat |
49004875 |
T |
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