View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14744_high_9 (Length: 365)
Name: NF14744_high_9
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_high_9 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 8762416 - 8762766
Alignment:
| Q |
15 |
aaaaatggaaggtttgaagggcttattccaaacctgttttgaccatgcccattattctccgcaacagcattggcttccaacttcgattttccaagcctaa |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8762416 |
aaaaatggaaggtttgaagagcttattccaaacctgttttgatcatggccactattctccacaacagcattggcttccaactttgattttccaagcctaa |
8762515 |
T |
|
| Q |
115 |
cttgttccaaatcttgaagagccaaccctttttgtatgtaagggaattggtcaacatgatgtgttggaaattggttgaaattgttaaaaacattgtttac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8762516 |
cttgttccaaatcttgaagagccaaccctttttgtatgtaagggaattggtcaacatgatgtgttggaaattggttgaaattgttaaaaacattgtttac |
8762615 |
T |
|
| Q |
215 |
acctcttgtttgatatgccagtgtttgcaaatattgaagtgttggcgcaagaagtttgtttgttcttttttcttcgatttctctgatcacagaactcgga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8762616 |
acctcttgtttgatatgccagtgtttgcaaatattgaagtgttggcgcaagaagtttgtttgttcttttttcttcgatttctctgatcacagaactcgga |
8762715 |
T |
|
| Q |
315 |
agacttgatgcaaaccttgattctagagctctctgagacatgccttcaacc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8762716 |
agacttgatgcaaaccttgattctagagctctctgagacatgccttcaacc |
8762766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 8788947 - 8789050
Alignment:
| Q |
15 |
aaaaatggaaggtttgaagggcttattccaaacctgttttgaccatgcccattattctccgcaacagcattggcttccaacttcgattttccaagcctaa |
114 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| ||||||||| |
|
|
| T |
8788947 |
aaaaatggaaggtttgaagagtttattccaaacctgttttgaccatggccattattctccgcaacaacatcggcttccaactttgattttacaagcctaa |
8789046 |
T |
|
| Q |
115 |
cttg |
118 |
Q |
| |
|
|||| |
|
|
| T |
8789047 |
cttg |
8789050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 8789054 - 8789137
Alignment:
| Q |
167 |
aacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatattg |
250 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8789054 |
aacatgatgtgttggaaattggttaaaatggttaaaaacattgtttgtacctcttgtttgatatgccagtgtatgcaaacattg |
8789137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 8789175 - 8789236
Alignment:
| Q |
291 |
atttctctgatcacagaactcggaagacttgatgcaaaccttgattctagagctctctgaga |
352 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||||| ||||||||| ||||| |
|
|
| T |
8789175 |
atttctctgatcacagaactcgatagacctgatgcaaacattgatgttagagctctgtgaga |
8789236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University