View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14744_low_11 (Length: 356)
Name: NF14744_low_11
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 41062383 - 41062706
Alignment:
| Q |
15 |
ttattctctaatgtacatgtttgtgacaggaccccatctataccatgacatcgaattgaagatccagacacacatatgtttgggctaataatctttacat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062383 |
ttattctctaatgtacatgtttgtgacaagaccccatctataccatgacatcgaattgaagatccagacacacatatgtttgggctaataatctttacat |
41062482 |
T |
|
| Q |
115 |
tgttgacaacaaaattcttcctaccattgttagatattctcatcatgcaatttggcaataaactaggaacggttgtgccactgggaaattgtttcaaggt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41062483 |
tgttgacaacaaaattcttcctaccattgttagatattctcattatgcaatttggcaataaactaggaacggttgtgccactaggaaattgtttcaaggt |
41062582 |
T |
|
| Q |
215 |
gtcaaagagtagaggtgatggaattgaatgtcttaacaagaattcagaaacagattcttcttgaagcgtcacatttgcgagcattcgatcatttggcatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062583 |
gtcaaagagtagaggtgatggaattgaatgtcttaacaagaatttagaaacagattcttcttgaagcgtcacatttgcgagcattcgatcatttggcatt |
41062682 |
T |
|
| Q |
315 |
aagaatgtcacgtttccttcgagt |
338 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41062683 |
aagaatgtcacgtttccttcgagt |
41062706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University