View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_12 (Length: 353)
Name: NF14744_low_12
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 42953050 - 42952715
Alignment:
| Q |
18 |
gaaccaacaagaagttcatcttgattcttgacatccaatattggatcgataagcaatgacatgttctaaacctttcatgcagttgcttatnnnnnnnnca |
117 |
Q |
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| T |
42953050 |
gaaccaacaagaagttcatcttgattcttgacatccaatattggatcgataagcaatgacatgttctaaacctttcatgcagttgcttataaaaaaaaca |
42952951 |
T |
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| Q |
118 |
accttccatgcagttgtatagtcaatatatttgacaagtacacgagacagctcaattatctgacacaaggaatagaaactccactctcatgaagatcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42952950 |
accttccatgcagttgtatagtcaatatatttgataagtacacgagacagctcaattatctgacacaaggaatagaaactccactctcatgaagatcaca |
42952851 |
T |
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| Q |
218 |
gtccaaatacatgcaaattaaaatattcctttaggacaaacnnnnnnnttataatttctgtaccaactgtgataatgttgctcatgatagtttcatattg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42952850 |
gtccaaatacatgcaaattaaaatattcctttaggacaaacaaaaaaattataatttctgtaccaactgtgataatgttgctcatgatagtttcatattg |
42952751 |
T |
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| Q |
318 |
gccgaacttatctgaatttacaaaatctagggaatt |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42952750 |
gccgaacttatctgaatttacaaaatctagggaatt |
42952715 |
T |
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