View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_13 (Length: 353)
Name: NF14744_low_13
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 48485146 - 48484821
Alignment:
| Q |
19 |
agatgcatgaatcagaactacagctcatgcatcttctagtcacttaccattgacccagatgaaattttgcatcaaagaacgactatttatttgataccta |
118 |
Q |
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| T |
48485146 |
agatgcatgaatcagaactacagctcatgcatcttctagtcacttaccattgacccagatgaaattttgcatcaaagaacgactatttatttgataccta |
48485047 |
T |
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| Q |
119 |
ataaattttcatagtcagagccttgacactcattcaacgaaggaggttgcttgcacttaaatcccaagactatagtatcttaatttcagtagatacagag |
218 |
Q |
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| T |
48485046 |
ataaattttcatagtcagagccttgacactcattcaacgaaggaggttgcttgctcttaaatcccaagactatagtatcttaatttcagtagatacagag |
48484947 |
T |
|
| Q |
219 |
ttgttagttatgccatgtgtaacaccgacactaaaaattgaaggcacctttttagttcaaacgactctgacacatgttgcatttaacatttctatttttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484946 |
ttgttagttatgccatgtgtaacaccgacactaaaaattgaaggcacctttttagttcaaacgactctgacacatgttgcatttaacatttctatttttt |
48484847 |
T |
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| Q |
319 |
aaaattgttttcggtgtctatgcgtc |
344 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48484846 |
aaaattgttttcggtgtctatgcgtc |
48484821 |
T |
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