View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14744_low_15 (Length: 330)

Name: NF14744_low_15
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14744_low_15
NF14744_low_15
[»] chr2 (6 HSPs)
chr2 (41-330)||(36421847-36422136)
chr2 (76-163)||(36425490-36425577)
chr2 (194-271)||(36425410-36425487)
chr2 (273-330)||(36425327-36425384)
chr2 (164-226)||(29264413-29264474)
chr2 (141-226)||(17315944-17316029)
[»] chr3 (3 HSPs)
chr3 (76-205)||(17120285-17120412)
chr3 (139-226)||(30484861-30484948)
chr3 (155-216)||(5171034-5171095)
[»] chr1 (8 HSPs)
chr1 (140-226)||(33858148-33858233)
chr1 (140-226)||(33922690-33922775)
chr1 (141-197)||(33185027-33185083)
chr1 (139-215)||(19636075-19636155)
chr1 (76-146)||(47463582-47463652)
chr1 (141-205)||(44288022-44288086)
chr1 (105-140)||(26047732-26047767)
chr1 (164-205)||(47463655-47463696)
[»] chr8 (3 HSPs)
chr8 (146-226)||(5124536-5124616)
chr8 (152-223)||(5431014-5431082)
chr8 (189-226)||(28855468-28855505)
[»] chr5 (3 HSPs)
chr5 (148-226)||(30874617-30874695)
chr5 (141-205)||(1375046-1375110)
chr5 (139-183)||(30212999-30213043)
[»] chr7 (3 HSPs)
chr7 (188-226)||(46660883-46660921)
chr7 (149-226)||(22696243-22696319)
chr7 (45-85)||(43703036-43703076)
[»] chr6 (1 HSPs)
chr6 (139-205)||(15584643-15584709)
[»] chr4 (5 HSPs)
chr4 (139-205)||(34559399-34559465)
chr4 (165-226)||(3125231-3125291)
chr4 (141-226)||(49600635-49600720)
chr4 (139-226)||(8368013-8368101)
chr4 (141-205)||(54857384-54857448)
[»] scaffold0072 (1 HSPs)
scaffold0072 (170-226)||(6049-6104)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 330
Target Start/End: Complemental strand, 36422136 - 36421847
Alignment:
Q  41 aaaataagttaaggaacctaatgatcaattaagccttaattttattaatctactaacaccaatatgcttaatttcaaagaattaaactaaattagttcag 140  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36422136 aaaataaattaagggacctaatgatcaattaagccttaattttattaatctactaacaccaatatgcttaatttcaaagaattaaactaaattagttcag 36422037  T
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaataacgaccatcctact 240  Q
    ||||||||||||||||||||||| ||||||||| |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36422036 tgttatgtttaattttatattaaatatatgtttatttatactttatagtattattcatgtaatttatcccaaaaaatgatcaaataacgaccatcctact 36421937  T
Q  241 atttatcatatgctatacgctatcttgctattctggattgactactctgatctatagtgatgcagtcaaaaatataaataaaaattggtc 330  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  36421936 atttatcatatgctatacactatcttgctattctggattgaccactctgatctatagtgatgcagtctcaaatataagtaaaaattggtc 36421847  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 36425577 - 36425490
Alignment:
Q  76 ttaattttattaatctactaacaccaatatgcttaatttcaaagaattaaactaaattagttcagtgttatgtttaattttatattaa 163  Q
    ||||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  36425577 ttaattttattaatctactaaaaccattatgcttaattttgaagaattaaactaaattagttcagttttatgtttaattttatattaa 36425490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 36425487 - 36425410
Alignment:
Q  194 ttcatgtaatttatcccaaaaaatgatcaaataacgaccatcctactatttatcatatgctatacgctatcttgctat 271  Q
    |||||||||||||||| ||||| |||||||||||||| |||||  ||| || ||||||||||||||||||||||||||    
T  36425487 ttcatgtaatttatccaaaaaattgatcaaataacgatcatcccgctacttgtcatatgctatacgctatcttgctat 36425410  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 36425384 - 36425327
Alignment:
Q  273 ctggattgactactctgatctatagtgatgcagtcaaaaatataaataaaaattggtc 330  Q
    ||||||||||||||||||||||||||||| ||||   |||||||| ||||||||||||    
T  36425384 ctggattgactactctgatctatagtgattcagtatcaaatataagtaaaaattggtc 36425327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 29264413 - 29264474
Alignment:
Q  164 ttatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    ||||| ||||||||||||||  | |||||||||||||||||| | ||||||||| ||||||||    
T  29264413 ttataagtttgtttatactttatagtattattcatgtaatttgt-ccaaaaaataatcaaata 29264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 17316029 - 17315944
Alignment:
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  | |||||||| | ||||||| ||  ||||| | ||||||||    
T  17316029 tgttatatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaatttgtcaaaaaaagttatcaaata 17315944  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 17120285 - 17120412
Alignment:
Q  76 ttaattttattaatctactaacaccaatatgcttaatttcaaagaattaaactaaattagttcagtgttatgtttaattttatattaattatatgtttgt 175  Q
    ||||||||||||||| |||| ||||| ||||||||||||  | |||||||| |||||||||| |||||||| |||||||||||||||| |||||| || |    
T  17120285 ttaattttattaatccactatcaccattatgcttaattttgatgaattaaattaaattagttgagtgttatatttaattttatattaaatatatgatttt 17120384  T
Q  176 ttatacttccttgtattattcatgtaattt 205  Q
    |||||||  || ||||||||| ||||||||    
T  17120385 ttatact--ctagtattattcgtgtaattt 17120412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 30484948 - 30484861
Alignment:
Q  139 agtgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||||| |||||||||||||||| |||| || | || ||||||  | |||||||||||||||||| | | ||||||| ||||||||    
T  30484948 agtgttatatttaattttatattaaatataagtgttttaatactttatagtattattcatgtaatttgtacaaaaaaataatcaaata 30484861  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 5171095 - 5171034
Alignment:
Q  155 ttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaa 216  Q
    ||||||| | |||| ||||||||||||||| | ||||||||||||| |||| ||||||||||    
T  5171095 ttatatttaatatacgtttgtttatacttcatagtattattcatgttatttgtcccaaaaaa 5171034  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 33858233 - 33858148
Alignment:
Q  140 gtgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    ||||||| |||||||||||||||| |||||||||||||||||||  | |||||||||||||||||| | ||||||||||||||||||    
T  33858233 gtgttatatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgt-ccaaaaaatgatcaaata 33858148  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 33922690 - 33922775
Alignment:
Q  140 gtgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    ||||||| |||||||||||||||| |||||||||||||||||||  | |||||||||||||||||| | ||||||||||||||||||    
T  33922690 gtgttatatttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgt-ccaaaaaatgatcaaata 33922775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 33185083 - 33185027
Alignment:
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattca 197  Q
    |||||| |||||||||||||||| |||||||||||||||||||  | ||||||||||    
T  33185083 tgttatatttaattttatattaaatatatgtttgtttatactttatagtattattca 33185027  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 19636075 - 19636155
Alignment:
Q  139 agtgttatgtttaattttatattaattatat----gtttgtttatacttccttgtattattcatgtaatttatcccaaaaa 215  Q
    |||||||| ||||||||||||||||||| ||    ||||||||||||||  | |||||||||||||||||| ||| |||||    
T  19636075 agtgttatatttaattttatattaattaaatataagtttgtttatactttatcgtattattcatgtaatttgtccaaaaaa 19636155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 47463582 - 47463652
Alignment:
Q  76 ttaattttattaatctactaacaccaatatgcttaatttcaaagaattaaactaaattagttcagtgttat 146  Q
    |||||||||||||||| ||||||||| ||| ||||||||  | |||||||||||| || ||| ||||||||    
T  47463582 ttaattttattaatctgctaacaccattatacttaattttgatgaattaaactaacttggttgagtgttat 47463652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 44288022 - 44288086
Alignment:
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaattt 205  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  | |||||||| |||||||||    
T  44288022 tgttatatttaattttatattagatatatgtttgtttataatttatagtattatttatgtaattt 44288086  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 26047767 - 26047732
Alignment:
Q  105 tgcttaatttcaaagaattaaactaaattagttcag 140  Q
    |||||||||| |||||||||||||||||||||||||    
T  26047767 tgcttaattttaaagaattaaactaaattagttcag 26047732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 47463655 - 47463696
Alignment:
Q  164 ttatatgtttgtttatacttccttgtattattcatgtaattt 205  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  47463655 ttatatgtttgtttatactttatagtattattcatgtaattt 47463696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 5124536 - 5124616
Alignment:
Q  146 tgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||||||||||| ||| |||||||||||||||||||  | |||||||||||||||||| ||| ||||| ||||||||||    
T  5124536 tgtttaattttatactaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaaaattgatcaaata 5124616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 5431014 - 5431082
Alignment:
Q  152 attttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaa 223  Q
    |||||||||| | ||||||  |||||||||||   | ||||||||||||||||| |||||||||||||||||    
T  5431014 attttatattcaatatatggctgtttatactt---tatattattcatgtaatttgtcccaaaaaatgatcaa 5431082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 28855468 - 28855505
Alignment:
Q  189 tattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  28855468 tattattcatgtaatttgtccaaaaaaatgatcaaata 28855505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 30874695 - 30874617
Alignment:
Q  148 tttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||||||||||||| |||||||||||||||||||  | |||||||||||||||||| ||| ||| ||  ||||||||    
T  30874695 tttaattttatattaaatatatgtttgtttatactttatagtattattcatgtaatttgtccaaaataacaatcaaata 30874617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 1375046 - 1375110
Alignment:
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaattt 205  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  | |||||||| | |||||||    
T  1375046 tgttatatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaattt 1375110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 30213043 - 30212999
Alignment:
Q  139 agtgttatgtttaattttatattaattatatgtttgtttatactt 183  Q
    |||||||| |||||||||||||||| |||||||| ||||| ||||    
T  30213043 agtgttatatttaattttatattaaatatatgttcgtttacactt 30212999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 46660921 - 46660883
Alignment:
Q  188 gtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  46660921 gtattattcatgtaatttgtccaaaaaaatgatcaaata 46660883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 22696319 - 22696243
Alignment:
Q  149 ttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    ||||||||||||||| |||| |||||||| |||||  | ||||||| ||||||| || | ||||||||| ||||||||    
T  22696319 ttaattttatattaaatataagtttgtttgtactttatagtattatacatgtaacttgt-ccaaaaaataatcaaata 22696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 43703076 - 43703036
Alignment:
Q  45 taagttaaggaacctaatgatcaattaagccttaattttat 85  Q
    |||||||||| ||| ||||||||||||||||||||| ||||    
T  43703076 taagttaagggaccaaatgatcaattaagccttaatattat 43703036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 15584709 - 15584643
Alignment:
Q  139 agtgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaattt 205  Q
    |||||||| || ||||||||||||| || |  |||||||||||||  | ||||||||||||||||||    
T  15584709 agtgttattttaaattttatattaaatacagttttgtttatactttatggtattattcatgtaattt 15584643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 34559465 - 34559399
Alignment:
Q  139 agtgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaattt 205  Q
    |||||||| ||| |||||||||||| |||| |||||||||| |||  | |||||||| |||||||||    
T  34559465 agtgttatatttcattttatattaaatataagtttgtttatgctttatagtattattgatgtaattt 34559399  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 3125231 - 3125291
Alignment:
Q  165 tatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||| ||||||||||||||| | |||||||||||||||||| | | ||||||| ||||||||    
T  3125231 tataagtttgtttatacttcatagtattattcatgtaatttgt-caaaaaaataatcaaata 3125291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 49600635 - 49600720
Alignment:
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  | |||||||| | ||||||| ||  ||||| | ||||||||    
T  49600635 tgttatatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaatttgtcaaaaaaagttatcaaata 49600720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 8368013 - 8368101
Alignment:
Q  139 agtgttatgtttaattttatattaattatatg-tttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    |||||||| |||||||||||||||| |||| | ||| |||| ||||  | ||||||| ||  |||||| ||| ||||||||||||||||    
T  8368013 agtgttatatttaattttatattaaatataagttttttttaaactttatagtattatccaaataatttgtccaaaaaaatgatcaaata 8368101  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 54857384 - 54857448
Alignment:
Q  141 tgttatgtttaattttatattaattatatgtttgtttatacttccttgtattattcatgtaattt 205  Q
    |||||| |||||||||||||||  |||||||||||||||| ||  | |||||||| | |||||||    
T  54857384 tgttatatttaattttatattagatatatgtttgtttataatttatagtattatttacgtaattt 54857448  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 6104 - 6049
Alignment:
Q  170 gtttgtttatacttccttgtattattcatgtaatttatcccaaaaaatgatcaaata 226  Q
    ||||||||||||||| | | |||||||||||||||| | ||||||||| ||||||||    
T  6104 gtttgtttatacttcatagcattattcatgtaattt-ttccaaaaaataatcaaata 6049  T

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