View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_17 (Length: 285)
Name: NF14744_low_17
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 270
Target Start/End: Original strand, 28887799 - 28888062
Alignment:
| Q |
3 |
ataaaatataaatcatcggaacaagagaaatatatattatgatggctaatttttccatcagtcacattgtcaaggataaagtactttttcattagcagca |
102 |
Q |
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| T |
28887799 |
ataaaatataaatcatcggaacaagagaaatatatattatgatggctaatttttccatcagtcacattgtcaaggataaagtactttttcattagcagca |
28887898 |
T |
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| Q |
103 |
tttgaaacaagcagctatttgtagagaacaaaagtatataactctactaattaactatcaacactgatgtgatgtactcaatagaggtgatttcccttca |
202 |
Q |
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| T |
28887899 |
tttgaaacaagcagctatttgtagagaacaaaagtatataactctac----taactatcaacactgatgtgatgtactcaatagaggtgatttcccttca |
28887994 |
T |
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| Q |
203 |
tattgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctctt |
270 |
Q |
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| T |
28887995 |
tattgatttactttccctttggggggaaaaagagcccaagtgcatccctcagaagcattgcctctctt |
28888062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 270
Target Start/End: Original strand, 28897550 - 28897726
Alignment:
| Q |
88 |
ttttcattagcagcatttgaaacaagcagctatttgtagagaacaaaagtatataactctactaattaactatcaacactgatgtgatgt-actcaatag |
186 |
Q |
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| T |
28897550 |
ttttcaatagcagcatttcaaacaggcagctacttggtgaaaacaaaagtatataactatattaatta----tcaaaactg--gtgatgttattaaatag |
28897643 |
T |
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| Q |
187 |
aggtgatttcccttcatattgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctctt |
270 |
Q |
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| T |
28897644 |
agatgatttcccttcattttgacttactttcacattaggg-aaaaaacagcttaagtgcatccctcagaagcattgcctctctt |
28897726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 74 - 270
Target Start/End: Original strand, 28912041 - 28912231
Alignment:
| Q |
74 |
aaggataaagtactttttcattagcagcatttgaaacaagcagctatttgtagagaacaaaagtatataact--ctactaattaactatcaacactgatg |
171 |
Q |
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| T |
28912041 |
aaggataaagtacttttttactagcagcatttcaaacagtcagccatttggtgaaaacaaaattatatatataactactgatta----tcaacactg--g |
28912134 |
T |
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| Q |
172 |
tgatgtactcaatagaggtgatttcccttcatattgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctctt |
270 |
Q |
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| T |
28912135 |
tgatgtatt-agtagagatgatttcccttcattttgatttactttgacatt-agggaaaaaagagcttaagtgcatccctcagaagcattgcctctctt |
28912231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 270
Target Start/End: Original strand, 28930605 - 28930798
Alignment:
| Q |
75 |
aggataaagtact---ttttcattagcagcatttgaaacaagcagctatttgtagagaa--caaaagtatataactctactaattaactatcaacactga |
169 |
Q |
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| T |
28930605 |
aggataaagtactaccttttcactagcagcatttcaaacaggcagctatttttggtgaaaccaaaagtatatacctctactatt----tatcaacactg- |
28930699 |
T |
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| Q |
170 |
tgtgatgtactcaatagaggtgatttcccttcatat-tgatttactttccctttgggggaaaaaagagcccaagtgcatccctcagaagcattgcctctc |
268 |
Q |
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| T |
28930700 |
-gtgatatattcaatagagatgatttcccttcatttattatttactttcac-atcggggaaaaaagag-ctaagtgcatccctcaaaagtattgcctctc |
28930796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 28921683 - 28921727
Alignment:
| Q |
226 |
ggaaaaaagagcccaagtgcatccctcagaagcattgcctctctt |
270 |
Q |
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| T |
28921683 |
ggaaaaaagagcttaagtgcatcccttagaagcattgcctctctt |
28921727 |
T |
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