View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_2 (Length: 608)
Name: NF14744_low_2
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 9 - 594
Target Start/End: Complemental strand, 21395366 - 21394777
Alignment:
| Q |
9 |
attattcttggaaaaaatataactctagtgtggttattggtcttttaaatatatttttattattgtttctagtctagaattgttagttatcctacgaaga |
108 |
Q |
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| T |
21395366 |
attattcttaaaaaaaatataactctagtgtggttattggtcttttaaatatatttttattattgtttccagtctag-----ttagttatcccacgaaga |
21395272 |
T |
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| Q |
109 |
atccactatcgccatgaagtgccgcactcgtaagttctcttgctagataattaggtctgcatttttcatttttaaaagaaaatattattatcatctacat |
208 |
Q |
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| T |
21395271 |
atccactatcgccatgaagtgccgcactcgtaagttctcttgctagatagttaggtctgcatttt-catttttaaaagaaaatattattatcatctacat |
21395173 |
T |
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| Q |
209 |
ttacatttagaataatataaagcaatcaaaca-aggtaagagacttggatcccttaaaatatataaccataggttcgcttcatggttatgcagaaattta |
307 |
Q |
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| T |
21395172 |
ttacatttagaataatataaagcaaccaaacccaggcaagagatttggatcccttaaaatatataatcatgggttcgctttgtggttatgcagaaattta |
21395073 |
T |
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| Q |
308 |
attggaagagaagaatctattttatgttactcacagattttctaacgatcagtcagcgctaaccgacaatggaaatttcatactactatcatgataatca |
407 |
Q |
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| T |
21395072 |
attggaagagaagaatctattttctgttattcatagattttccaacgatcagtcgatgctaaccgataatgaaaatttcatactaatatcatgataatca |
21394973 |
T |
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| Q |
408 |
aac--------tatatatatagagagagaaaacatggagttagttaatcttccattttcca-ttacccacttcaaataaataattaactaaaatccttca |
498 |
Q |
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||| |||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21394972 |
aacaaaatatatatatatatatatatagaaaacatggagttagttaatcttccattttccacttacccacttcaaataaataattaactaaaatccttca |
21394873 |
T |
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| Q |
499 |
taatctttatgtcatggtggatttgatatccggcggcttattaagcatttggagattattaagtttgctctctatccaatctttcaaatagatttg |
594 |
Q |
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| T |
21394872 |
taatctttatgtcatggtggatttgatatccggcggcttattaagcatttggagattattaagtttgctctctatccaatctttcaaatagatttg |
21394777 |
T |
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