View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_20 (Length: 244)
Name: NF14744_low_20
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 31860936 - 31860703
Alignment:
| Q |
6 |
aagttatatgtgttgtttgaaaatatacatgttgnnnnnnntctcacattgtttagaattaattgtaaagaaaggggagaccaaactatatatgagttat |
105 |
Q |
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| T |
31860936 |
aagttatatgtgttgattgaaaatatacatgttgaaaaaaatctcacattgtttagaattaattgtaaagaaaggggagaccaaactatatatgagttat |
31860837 |
T |
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| Q |
106 |
agtttttgcttgcaaaatgtactggttgaaaacactcttgcatttaacc--nnnnnnnnnnnnnccttgtcttatactcttgtcttagaatgttttaaga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
31860836 |
agtttttgcttgcaaaatgtactggttgaaaacactcttgcatttaaactttttttttttttttccttgtcttatactcttgtcttagaatgttttaaga |
31860737 |
T |
|
| Q |
204 |
tgtatttaatatttcctttggagggtgatgatgt |
237 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
31860736 |
tgtatttaatatttcctttggagggtgttgatgt |
31860703 |
T |
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