View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14744_low_21 (Length: 239)
Name: NF14744_low_21
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3115058 - 3114836
Alignment:
| Q |
1 |
tttgcaattctagtgacaattctaaaatatttaacgactaggttgatacggtcctacaatttcagggaccaaattgagtatttaccccaaaataaatact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3115058 |
tttgcaattctagtgacaattctaaaatatttaacgactaggttgatacggtcctacaatttcagggaccaaattgagtatttaccccaaaataaatact |
3114959 |
T |
|
| Q |
101 |
aaataatattaggaaaccttactttgcctttaatttcaaatgtgcagtcctttagcaaagaaccgatggatatcaatgcattattggaaattgaggccca |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3114958 |
aaataatattaggaaatcttactttgcctttaatttcaaacgtgcagtcctttagcaaagaaccgatggatatcaatgcattattggaaattgaggccca |
3114859 |
T |
|
| Q |
201 |
taagatatctccacttaaaccct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3114858 |
taagatatctccacttaaaccct |
3114836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 7145639 - 7145682
Alignment:
| Q |
42 |
gttgatacggtcctacaatttcagggaccaaattgagtatttac |
85 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
7145639 |
gttgacacagtcctacaattttagggaccaaattgagtatttac |
7145682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 31579086 - 31579054
Alignment:
| Q |
51 |
gtcctacaatttcagggaccaaattgagtattt |
83 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
31579086 |
gtcctacaatttcagtgaccaaattgagtattt |
31579054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 36498274 - 36498322
Alignment:
| Q |
36 |
gactaggttgatacggtcctacaatttcagggaccaaattgagtatttac |
85 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
36498274 |
gactaggttgatacggtccaacaatgtcagggaccaaattg-gtatttac |
36498322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 21496644 - 21496684
Alignment:
| Q |
36 |
gactaggttgatacggtcctacaatttcagggaccaaattg |
76 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21496644 |
gactaggttgatacaatcctacaatttcagggaccaaattg |
21496684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 7424242 - 7424197
Alignment:
| Q |
36 |
gactaggttgatacggtcctacaatttcagggaccaaattgagtat |
81 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||| |||| |
|
|
| T |
7424242 |
gactaggttgatacagtcctacaattttagggatcaaattgggtat |
7424197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 47892615 - 47892582
Alignment:
| Q |
52 |
tcctacaatttcagggaccaaattgagtatttac |
85 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
47892615 |
tcctacaatttcaaggaccaaattgagtatttac |
47892582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 55570898 - 55570849
Alignment:
| Q |
36 |
gactaggttgatacggtcctacaatttcagggaccaaattgagtatttac |
85 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
55570898 |
gactaggttgataccatcctacaatttcaatgaccaaattgaatatttac |
55570849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 8636814 - 8636763
Alignment:
| Q |
42 |
gttgatacggtcctacaatttcagggaccaaattgagtatttaccccaaaat |
93 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
8636814 |
gttgatacagttctacaatttcagggaccaaattgattatttatccaaaaat |
8636763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 32345228 - 32345186
Alignment:
| Q |
43 |
ttgatacggtcctacaatttcagggaccaaattgagtatttac |
85 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
32345228 |
ttgatacagtactacaatttcagggaccaaattgggtatttac |
32345186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University