View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_24 (Length: 231)
Name: NF14744_low_24
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_24 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13636950 - 13637182
Alignment:
| Q |
1 |
taaaagaggaaaattgtgtgattctctttccaaagacatgtaaaaacaccaaaaataaaattatctagattgtgattcacttgtgcaacacac-aaggta |
99 |
Q |
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| T |
13636950 |
taaaagagtaaaattgtgtgattctctttccaaagacatgtaaaaacaccaaaaataacattatctagattgtgactcacttgtgcaacacacaaaggta |
13637049 |
T |
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| Q |
100 |
gtttta-nnnnnnnnaccgagtgtgatgctaaaaaatttctagtttgaacatatgggggtccttcttaaaccagttataatgagcttaatgattgcataa |
198 |
Q |
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| T |
13637050 |
gttttattatattttaccgagtgtgatgctaaaaaacttctagtttggacatatgggggtctttcgtataccatttataatgagcttaatggtagcataa |
13637149 |
T |
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| Q |
199 |
atacaccaataagctatttgagtttgacaactt |
231 |
Q |
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| T |
13637150 |
atacaccaataagctattcgagtttgacaactt |
13637182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 13655509 - 13655612
Alignment:
| Q |
1 |
taaaagaggaaaattgtgtgattctctttccaaagacatgtaaaaacaccaaaaataaaattatctagattgtgattcacttgtgcaacacacaaggtag |
100 |
Q |
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| T |
13655509 |
taaaagaggaagattttgtgattttttttccaaagacatataaaagcaccaaaa-taaaattcactattttgtgattcacttgtgcaacacacaaagtag |
13655607 |
T |
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| Q |
101 |
tttta |
105 |
Q |
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||||| |
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| T |
13655608 |
tttta |
13655612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 14999459 - 14999500
Alignment:
| Q |
2 |
aaaagaggaaaattgtgtgattctctttccaaagacatgtaa |
43 |
Q |
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| T |
14999459 |
aaaagaggaaaattatgtgattctcatgccaaagacatgtaa |
14999500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 29468312 - 29468353
Alignment:
| Q |
2 |
aaaagaggaaaattgtgtgattctctttccaaagacatgtaa |
43 |
Q |
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| T |
29468312 |
aaaagaggagaattgtgtgattctcttgccgaagacatgtaa |
29468353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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