View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_28 (Length: 213)
Name: NF14744_low_28
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 8714423 - 8714236
Alignment:
| Q |
12 |
gaagaatatctaggacaatcagaagactctgtagtgattgatttcaactattatcgtgcaaatgatcaatttactcctagattaaaccaagatgtgtggg |
111 |
Q |
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| T |
8714423 |
gaagcatatctaggacaatcagaagactctgtagtgattgatttcaactattatcgtgcaaatgatcaatttactcctagattaaaccaagatgtgtggg |
8714324 |
T |
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| Q |
112 |
aggaattggaacaaattgtatttttcaagtatggtgctaagccacattgggttaaaaataggaacctagcattttcgaatgaattatg |
199 |
Q |
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| T |
8714323 |
aggaattggaacaaattgtatttttcaagtatggtgctaagccacattgggctaaaaataggaacctagcattttcgaatgaattatg |
8714236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 8733243 - 8733063
Alignment:
| Q |
12 |
gaagaatatctaggacaatcagaagactctgtagtgattgatttcaactattatcgtgcaaatgatcaatttactcctagattaaaccaagatgtgtggg |
111 |
Q |
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| T |
8733243 |
gaagcatatctaggacaatcagaagactctgtagttattgatttcaactattatcgagcaaatgaccaatttactcctagattaaaccaagacgtgtggg |
8733144 |
T |
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| Q |
112 |
aggaattggaacaaattgtatttttcaagtatggtgctaagccacattgggttaaaaataggaacctagcattttcgaatg |
192 |
Q |
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| T |
8733143 |
aggaattggaacaaattgcatttttcaagtatggtgctaagccacattgggctaagaataggaacttagcaatttcaaatg |
8733063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 20431743 - 20431916
Alignment:
| Q |
12 |
gaagaatatctaggacaatcagaagactctgtagtgattgatttcaactattatcgtgcaaatgatcaatttactcctagattaaaccaagatgtgtggg |
111 |
Q |
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| T |
20431743 |
gaagtatatctaggacaatcagaagactctgtagtgattgatttcaactattatcgtgcaaatgatcaatttcctgctagattaaaccaagatgtgtggg |
20431842 |
T |
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| Q |
112 |
aggaattggaacaaattgtatttttcaagtatggtgctaagccacattgggttaaaaataggaacctagcatttt |
186 |
Q |
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| T |
20431843 |
agaaattggaacagattg-ccttttcaagtatagtgctaagccacattgggataagaataggaacttagcatttt |
20431916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 10018148 - 10018311
Alignment:
| Q |
22 |
taggacaatcagaagactctgtagtgattgatttcaactattatcgtgcaaatgatcaatttactcctagattaaaccaagatgtgtgggaggaattgga |
121 |
Q |
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| T |
10018148 |
taggacaaccagaagagtctgtagtgattgatttcaactattatcttgcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattgta |
10018247 |
T |
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| Q |
122 |
acaaattgtatttttcaagtatggtgctaagccacattgggttaaaaataggaacctagcatttt |
186 |
Q |
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| T |
10018248 |
acagattgtcttttt-aattatagtgctaagccacattgggctaagaataggaacttagcatttt |
10018311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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