View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_6 (Length: 459)
Name: NF14744_low_6
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 41219069 - 41219514
Alignment:
| Q |
1 |
atagaaacaaatgagttgaaagcaataagatgtggtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattgaaccctcgaatatgttcga |
99 |
Q |
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| T |
41219069 |
atagaaacaaatgagttgaaagcaataagatgtggtaaagtctcatattgtgtgttggccgaagttacaatagtcacattgaaccctcgaatatgttcga |
41219168 |
T |
|
| Q |
100 |
agatctcgaacatatcttccagttctagggagaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaa |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41219169 |
agatcttgaacatatcttccagttctagggagaattcgcaaaactccgtttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaa |
41219268 |
T |
|
| Q |
200 |
cagaatccaaacctaaataatgtgctaaatgtagaaatgaagcatatatcaagggatcaaaacttgatttcttagctttagtgtg-taattattaaatgt |
298 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
41219269 |
cagaatccaaacctaaataacgtgctaaatgtagaaatgaagcatatatcaagggatcaaaacttgatttcttagctttattgtgttaattattaaatgt |
41219368 |
T |
|
| Q |
299 |
ttgaatcaagtctaacttcaactagttcatattgaattatcttattcatcatgtgtcaaaacaccaacattactatgtttgaggatgaaaacatacactt |
398 |
Q |
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| T |
41219369 |
ttgaatcaagtctaacttcaactagttcatattgaattatcttattcatcatgtgtcaaaacaccaacattactatgtttgaggatgaaaacaaacactt |
41219468 |
T |
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| Q |
399 |
acagaatgccattttaaacgcgtgtcagaaatatatcatccaaact |
444 |
Q |
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| T |
41219469 |
acagaatgccattttaaacgcgtatcagaaatatatcatccaaact |
41219514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 13340782 - 13340832
Alignment:
| Q |
32 |
gtggtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattga |
81 |
Q |
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| T |
13340782 |
gtggtaaagtctcttattatgtgttggtcgaagttacaatagtcacattga |
13340832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 24499336 - 24499410
Alignment:
| Q |
35 |
gtaaagtctcat-ttgtgtgttggccgaagttacaatagtcacattgaaccctcgaatatgttcgaagatctcga |
108 |
Q |
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| T |
24499336 |
gtaaagtctcatattgtgtgttggtcgaagttacaataatcacattgaatcctcgaatatgttcgaagatctcga |
24499410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 39462312 - 39462183
Alignment:
| Q |
54 |
ttggccgaagttacaatagtcacattgaaccctcgaatatgttcgaagatctcgaacatatcttccagttctagggagaattcgcaaaactc------cg |
147 |
Q |
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|||||| |||| ||| ||||||||||||| |||||||||| ||||||||||| || |||||||| |||| |||| |||| ||||||||| || |
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| T |
39462312 |
ttggccaaagtgacagtagtcacattgaatcctcgaatattttcgaagatctaaaaataatcttccacttctggggataatttgcaaaactcccttctcg |
39462213 |
T |
|
| Q |
148 |
tttccatcgagaattaaatggagttttccc |
177 |
Q |
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||||||||| |||| |||||||||||||| |
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| T |
39462212 |
attccatcgataattgaatggagttttccc |
39462183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 39409177 - 39409229
Alignment:
| Q |
149 |
ttccatcgagaattaaatggagttttcccgtatttcgacaggagaatctaaca |
201 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |||||||||||| |
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| T |
39409177 |
ttccatcgagaattgaatggagtttccccgtatttcgactagagaatctaaca |
39409229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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