View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14744_low_9 (Length: 366)
Name: NF14744_low_9
Description: NF14744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14744_low_9 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 44 - 347
Target Start/End: Complemental strand, 28072228 - 28071921
Alignment:
| Q |
44 |
tgacatctaagactttttaaaggacaagcaaaacaacagatggtaatggcattagcat----aacgaaaaaacaactgttaatcatgctatgaagcctgc |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
28072228 |
tgacatctaagactttttaaaggacaagcaaaacaacagatggtaatggcattagcatccacaatgaaaaaacaactgttaatcatgccatgaagcctgc |
28072129 |
T |
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| Q |
140 |
atcctgataatgaaccacagaaagaatgataaaagaaacacataagaccagatgataatttaccatcaaagttgccatcaacaattcgactagcatcgtt |
239 |
Q |
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| T |
28072128 |
atcctgataatgaaccacagaaagaatgataaaagaaacacataagaccagatgataatttaccatcaaagttgccatcaacaattcgactagcatcgtt |
28072029 |
T |
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| Q |
240 |
gtaattatccattgaaatgacagcaatgctgggcatgaagttgagtatcttttcggtaaatatagtctttccagctcccgaaggacccgccaccccaacc |
339 |
Q |
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| T |
28072028 |
gtaattatccattgaaatgacagcaatgctgggcatgaagttgagtatcttttcggtaaatatagtcttcccagctcctgaaggacccgccaccccaacc |
28071929 |
T |
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| Q |
340 |
aatattat |
347 |
Q |
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|||||||| |
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| T |
28071928 |
aatattat |
28071921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 45927200 - 45927124
Alignment:
| Q |
199 |
ttaccatcaaagttgccatcaacaattcgactagcatcgttgtaattatccattgaaatgacagcaatgctgggcat |
275 |
Q |
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| T |
45927200 |
ttaccatcaaagtttccatcaatgattcgactagaatcattataattatccatagtaataacagcaatacttggcat |
45927124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 106 - 347
Target Start/End: Original strand, 20890 - 21131
Alignment:
| Q |
106 |
aaaaaacaactgttaatcatgctatgaagcctgcatcctgataatgaaccacagaaagaatgataaaagaaacacataagaccagatgataatttaccat |
205 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
20890 |
aaaaaacaattgttaatcatgctatcaagcctgcatcctgataatgaaccacataaagaatgataaaagaaacacctaagaccagatgatgatttaccat |
20989 |
T |
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| Q |
206 |
caaagttgccatcaacaattcgactagcatcgttgtaattatccattgaaatgacagcaatgctgggcatgaagttgagtatcttttcggtaaatatagt |
305 |
Q |
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| T |
20990 |
caaagttgccatcaacaattcgactagcatccttgtaattatccattgaaatgacagcaatgctaggcatgaagttgagtatcttttcggtaaatatagt |
21089 |
T |
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| Q |
306 |
ctttccagctcccgaaggacccgccaccccaaccaatattat |
347 |
Q |
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| T |
21090 |
ctttccagctcccgaaggacccgccaccccaaccaatattat |
21131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 327
Target Start/End: Complemental strand, 29535119 - 29534989
Alignment:
| Q |
197 |
atttaccatcaaagttgccatcaacaattcgactagcatcgttgtaattatccattgaaatgacagcaatgctgggcatgaagttgagtatcttttcggt |
296 |
Q |
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|||||||||| ||||| ||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||| ||||||| |||||| ||||||||||| |
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| T |
29535119 |
atttaccatcgaagtttccatcgacaattcgactagaatcattgtaattgtccattgaaatgactgcaatatcgggcatggagttgaatatcttttcggc |
29535020 |
T |
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| Q |
297 |
aaatatagtctttccagctcccgaaggaccc |
327 |
Q |
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| T |
29535019 |
aaacacagtctttccagccccagaaggaccc |
29534989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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