View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14745_high_1 (Length: 671)
Name: NF14745_high_1
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_high_1 |
 | |
|
| [»] scaffold0361 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0361 (Bit Score: 580; Significance: 0; HSPs: 4)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 14 - 661
Target Start/End: Complemental strand, 13075 - 12428
Alignment:
| Q |
14 |
aaatgttgtttaattgcagtcgcattgcaattatggagatgttaaaaacttggatgtcagcggcccatagtgtggctgtggacctttcttagaccttgta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13075 |
aaatgttgtttaattgcagtcgcattgcaattgtggagatgttaaaaacttggatgtcagcggcccatagtgtggctgtggacctttcttagaccttgta |
12976 |
T |
|
| Q |
114 |
taaaaatgtgatagaaactttgcagggtttgaaaaattgtattgcttaagctgtacaactttagtgagcaattttgtttatggagaaccgttatacattt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12975 |
taaaaatgtgatagaaactttgcagggtttgaaaaattgtattgcttaagctgtacaactttagtgagcaattttgtttatggagaaccgttatacattt |
12876 |
T |
|
| Q |
214 |
atagttaatagtgtttgtttgggctgttcaaataactctttggaaccaaaatgaaccaaactgccattnnnnnnnctgatctggtaacgtaatttactaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12875 |
atagttaatagtgtttgtttgggctgttcaaataactctttggaaccaaaatgaaccaaactgccattaaaaaaactgatctggtaacgtaatttactaa |
12776 |
T |
|
| Q |
314 |
ctgaatcatgttttatatgtcagttctctagctgaacttgtaatgcctagagttcggtgaactgcgaccaaccgtgaaccttctattgtgaaatcaagct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12775 |
ctgaatcatgttttatatgtcagttctctagctgaacttgtaatgcctagagttcggtgaactgcgaccaaccgtgaaccttctattgtgaaatcaagct |
12676 |
T |
|
| Q |
414 |
tcaggccttagaaaaataacagtaacatgagataattcatatcccctagatttatcatctcatggtgatattgtttgagtgcaattcccctttttgcata |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12675 |
tcaggccttagaaaaataacagtaacatgagataattcatatcccctagatttatcatctcatggtgatattgtttgagtgcaattcccctttttgcata |
12576 |
T |
|
| Q |
514 |
atttcgatagattgaagnnnnnnnnnnnnngaatcacaagctcgtgatattgctactacgatgtgatggttagcacttagccgatacatattcacttaat |
613 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12575 |
atttcgatagattgaagtttttttctttttgaatcacaagctcgtgatattgctactacgatgtgatggttagcacttagccgatacatattcacttaat |
12476 |
T |
|
| Q |
614 |
gggacaggtgtttcttgctatgttgtttcaattctacttcttttcagt |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12475 |
gggacaggtgtttcttgctatgttgtttcaattctacttcatttcagt |
12428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 16373 - 16459
Alignment:
| Q |
185 |
ttttgtttatggagaaccgttatacatttatagttaatagtgtttgtttgggctgttcaaataactctttggaaccaaaatgaacca |
271 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||| | |||||| | ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16373 |
ttttgtttacggcgaaccattatacatttatagttaacggaatttgttcgagctgttcaaataactctttagaaccaaactgaacca |
16459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 16320 - 16248
Alignment:
| Q |
102 |
ttagaccttgtataaaaatgtgatagaaactttgcagggtttga-aaaattgtattgcttaagctgtacaact |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||| ||||||||||| || ||||| ||||||| |
|
|
| T |
16320 |
ttagaccctgtataaaaatgtgatagaaacttgtcaaggtttgaaaaaattgtattactgaagctatacaact |
16248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 17256 - 17316
Alignment:
| Q |
303 |
taatttactaactgaatcatgtttta-tatgtcagttctctagctgaacttgtaatgccta |
362 |
Q |
| |
|
|||||||||||||||| ||||| | | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
17256 |
taatttactaactgaaccatgtgtaaatatgtcagttctctaactgaacttgtaatgccta |
17316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 485
Target Start/End: Complemental strand, 4948408 - 4947946
Alignment:
| Q |
14 |
aaatgttgtttaattgcagtcgcattgcaattatggagatgttaaaaacttggatgtcagcggcccatagtgtggctgtggacctttcttagaccttgta |
113 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4948408 |
aaatgttgtttaattgcggttgcgttgcaattgtggagatgttcaaaactttgatgtcagcggcccatagtgtggctgtggacctttcttagaccctgta |
4948309 |
T |
|
| Q |
114 |
taaaaatgtgatagaaactttgcagggtttgaaaaattgtattgcttaagctgtacaactttagtgagcaattttgtttatggagaaccgttatacattt |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
4948308 |
taaaaatgtgatagaaactttgcagcatttgaaaaattgtattgctgaagcgatacaactttagtaagcaattttgtttatgtagaaccgttatacattt |
4948209 |
T |
|
| Q |
214 |
ata------gttaatagtgtttgtttgggctgttcaaataactctttggaaccaaaatgaaccaaactgccattnnnnnnnctgatctggtaacgtaatt |
307 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
4948208 |
ataattatagttaacagtgtttgtttgggctgttcaaataactctttagaaccaaaatgaaccaaactg---------------atctgctaacgtgatt |
4948124 |
T |
|
| Q |
308 |
tactaactgaatcatgttttatatgtcagttctctagctgaacttgtaatgcctagagttcggtgaactgcgaccaaccgtgaaccttctattgtgaaat |
407 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4948123 |
tactaactgaatcatgtttaatatgtcagttctctagctgaacttgtaatgcttagaattcggtgaactgcgaccaactgtgaaccttctattgtgaaat |
4948024 |
T |
|
| Q |
408 |
caagcttcaggccttagaaaaataacagtaacatgagataattcatatcccctagatttatcatctcatggtgatatt |
485 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4948023 |
caagcttcaggccttagaacaataacagtaacatgagataattcatatcccctagatatatcatctcatggtgatatt |
4947946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 560 - 653
Target Start/End: Complemental strand, 4947889 - 4947797
Alignment:
| Q |
560 |
atattgctactacgatgtgatggttagcacttagccgatacatattcacttaatgggacaggtgtttcttgctatgttgtttcaattctacttc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4947889 |
atattgctactacgatgtgatggttagcacttagctgatac-tattcatataatgggacatgtgtttcttgctatgttgtttcaattctacttc |
4947797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University