View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14745_high_11 (Length: 327)
Name: NF14745_high_11
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_high_11 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 327
Target Start/End: Original strand, 46340872 - 46341095
Alignment:
| Q |
107 |
cttacggaatatggtaaaattcccatgcaacatgactacaaatgctcaaatccacatcttttgtttaacttcctcctcttagcatctgggatactactat |
206 |
Q |
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| T |
46340872 |
cttatggaatatggtaaaattcccatgccacatgactacaaaagctctgatccacaggttttgtttagcttcctccttttagcatctgggctactactat |
46340971 |
T |
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| Q |
207 |
atgaagaagaatatga---accaacactagcattggtatcatcacatttgtagcagaagcacaatgtatcaaacatacccattgggctttgaagcacact |
303 |
Q |
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| T |
46340972 |
gtgaagaagaacatgaaccaccaccaccagcattggtgtcatcacttttgtagctgaagcacaatgtatccaacacacccattgggctttgaggcacact |
46341071 |
T |
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| Q |
304 |
agagacagaagaggcatttgaatc |
327 |
Q |
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| T |
46341072 |
agggacagaagatgcacttgaatc |
46341095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 31295694 - 31295592
Alignment:
| Q |
225 |
caacactagcattggtatcatcacatttgtagcagaagcacaatgtatcaaacatacccattgggctttgaagcacactagagacagaagaggcatttga |
324 |
Q |
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| T |
31295694 |
caacaccagcattgttgtcatcacatttgtagcggaagcgcaatgtatcaaacatacccattgggctttgaagcacactagagacagaagaggcatttga |
31295595 |
T |
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| Q |
325 |
atc |
327 |
Q |
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| T |
31295594 |
atc |
31295592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 31295863 - 31295694
Alignment:
| Q |
17 |
aacatactaccaacttacgttcgaacacactgataatatat---tgcataattaataatctccattatatatacgtatcattgtatcattaatcttacgg |
113 |
Q |
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| T |
31295863 |
aacatactaccgact-acgttcgaacacaatgataatatatctttacataattaataatctacgttatatataagtatcaat--------aaccttatgg |
31295773 |
T |
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| Q |
114 |
aatatggtaaaattcccatgcaacatgactacaaatgctcaaatccacatcttttgtttaacttcctcctcttagcatc |
192 |
Q |
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| T |
31295772 |
aatatggtaaaattcccatgcaacatgactacagaagctctaatccacatcttttgtttagcttccttctcttagcatc |
31295694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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